Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05645

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05644 and H281DRAFT_05645 are separated by 114 nucleotidesH281DRAFT_05645 and H281DRAFT_05646 overlap by 103 nucleotidesH281DRAFT_05646 and H281DRAFT_05647 are separated by 198 nucleotides H281DRAFT_05644: H281DRAFT_05644 - phospholipid-binding lipoprotein MlaA, at 67,593 to 68,648 _05644 H281DRAFT_05645: H281DRAFT_05645 - phospholipid transport system substrate-binding protein, at 68,763 to 69,395 _05645 H281DRAFT_05646: H281DRAFT_05646 - hypothetical protein, at 69,293 to 69,682 _05646 H281DRAFT_05647: H281DRAFT_05647 - ABC-2 type transport system ATP-binding protein, at 69,881 to 70,813 _05647 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 67.785 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.827 kb on - strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.104 kb on - strand, within H281DRAFT_05644at 68.104 kb on - strand, within H281DRAFT_05644at 68.106 kb on + strand, within H281DRAFT_05644at 68.106 kb on + strand, within H281DRAFT_05644at 68.106 kb on + strandat 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.121 kb on - strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.157 kb on + strand, within H281DRAFT_05644at 68.178 kb on - strand, within H281DRAFT_05644at 68.178 kb on - strand, within H281DRAFT_05644at 68.195 kb on + strand, within H281DRAFT_05644at 68.235 kb on + strand, within H281DRAFT_05644at 68.236 kb on - strand, within H281DRAFT_05644at 68.274 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.317 kb on - strand, within H281DRAFT_05644at 68.343 kb on + strand, within H281DRAFT_05644at 68.343 kb on + strand, within H281DRAFT_05644at 68.671 kb on + strandat 68.718 kb on - strandat 68.748 kb on + strandat 68.762 kb on + strandat 69.087 kb on + strand, within H281DRAFT_05645at 69.088 kb on - strand, within H281DRAFT_05645at 69.088 kb on - strand, within H281DRAFT_05645at 69.088 kb on - strand, within H281DRAFT_05645at 69.130 kb on - strand, within H281DRAFT_05645at 69.225 kb on + strand, within H281DRAFT_05645at 69.226 kb on - strand, within H281DRAFT_05645at 69.252 kb on + strand, within H281DRAFT_05645at 69.252 kb on + strand, within H281DRAFT_05645at 69.291 kb on + strand, within H281DRAFT_05645at 69.292 kb on - strand, within H281DRAFT_05645at 69.529 kb on + strand, within H281DRAFT_05646at 69.529 kb on + strand, within H281DRAFT_05646at 69.529 kb on + strand, within H281DRAFT_05646at 69.650 kb on + strandat 69.661 kb on + strandat 69.662 kb on - strandat 69.729 kb on - strandat 69.737 kb on - strandat 69.759 kb on + strandat 69.759 kb on + strandat 69.851 kb on + strandat 69.891 kb on + strandat 69.917 kb on + strandat 70.187 kb on + strand, within H281DRAFT_05647at 70.187 kb on + strand, within H281DRAFT_05647at 70.190 kb on + strand, within H281DRAFT_05647

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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67,785 + H281DRAFT_05644 0.18 +0.3
67,789 + H281DRAFT_05644 0.19 -0.5
67,789 + H281DRAFT_05644 0.19 -0.1
67,790 - H281DRAFT_05644 0.19 -0.4
67,790 - H281DRAFT_05644 0.19 -0.1
67,790 - H281DRAFT_05644 0.19 -0.3
67,790 - H281DRAFT_05644 0.19 +0.0
67,790 - H281DRAFT_05644 0.19 +0.2
67,790 - H281DRAFT_05644 0.19 +0.1
67,790 - H281DRAFT_05644 0.19 +0.5
67,826 + H281DRAFT_05644 0.22 -1.0
67,826 + H281DRAFT_05644 0.22 +0.0
67,827 - H281DRAFT_05644 0.22 -3.7
67,854 + H281DRAFT_05644 0.25 +0.6
67,854 + H281DRAFT_05644 0.25 +0.5
67,854 + H281DRAFT_05644 0.25 +0.0
67,854 + H281DRAFT_05644 0.25 -3.2
67,855 - H281DRAFT_05644 0.25 -0.4
67,855 - H281DRAFT_05644 0.25 +1.0
68,103 + H281DRAFT_05644 0.48 +0.6
68,103 + H281DRAFT_05644 0.48 +0.1
68,103 + H281DRAFT_05644 0.48 +0.6
68,103 + H281DRAFT_05644 0.48 -0.1
68,104 - H281DRAFT_05644 0.48 +1.4
68,104 - H281DRAFT_05644 0.48 -0.6
68,106 + H281DRAFT_05644 0.49 -0.8
68,106 + H281DRAFT_05644 0.49 -0.9
68,106 + +0.3
68,107 - H281DRAFT_05644 0.49 -0.4
68,107 - H281DRAFT_05644 0.49 +0.7
68,107 - H281DRAFT_05644 0.49 -0.2
68,107 - H281DRAFT_05644 0.49 +0.2
68,107 - H281DRAFT_05644 0.49 +0.8
68,107 - H281DRAFT_05644 0.49 -0.4
68,120 + H281DRAFT_05644 0.50 +0.6
68,120 + H281DRAFT_05644 0.50 +0.5
68,120 + H281DRAFT_05644 0.50 -1.1
68,120 + H281DRAFT_05644 0.50 +0.1
68,121 - H281DRAFT_05644 0.50 +1.0
68,124 + H281DRAFT_05644 0.50 +3.7
68,124 + H281DRAFT_05644 0.50 +0.0
68,124 + H281DRAFT_05644 0.50 +1.1
68,124 + H281DRAFT_05644 0.50 +0.2
68,124 + H281DRAFT_05644 0.50 -0.2
68,124 + H281DRAFT_05644 0.50 -0.2
68,125 - H281DRAFT_05644 0.50 -0.5
68,125 - H281DRAFT_05644 0.50 +1.4
68,125 - H281DRAFT_05644 0.50 +0.3
68,125 - H281DRAFT_05644 0.50 -0.5
68,157 + H281DRAFT_05644 0.53 +1.2
68,178 - H281DRAFT_05644 0.55 +0.4
68,178 - H281DRAFT_05644 0.55 +0.5
68,195 + H281DRAFT_05644 0.57 +0.5
68,235 + H281DRAFT_05644 0.61 +0.2
68,236 - H281DRAFT_05644 0.61 +0.9
68,274 + H281DRAFT_05644 0.64 +0.9
68,316 + H281DRAFT_05644 0.68 +0.8
68,316 + H281DRAFT_05644 0.68 -0.5
68,316 + H281DRAFT_05644 0.68 -0.0
68,317 - H281DRAFT_05644 0.69 -0.1
68,343 + H281DRAFT_05644 0.71 +0.1
68,343 + H281DRAFT_05644 0.71 -1.4
68,671 + +1.2
68,718 - +0.5
68,748 + +0.9
68,762 + +0.6
69,087 + H281DRAFT_05645 0.51 +0.5
69,088 - H281DRAFT_05645 0.51 +1.3
69,088 - H281DRAFT_05645 0.51 +2.5
69,088 - H281DRAFT_05645 0.51 -0.0
69,130 - H281DRAFT_05645 0.58 +1.7
69,225 + H281DRAFT_05645 0.73 +1.2
69,226 - H281DRAFT_05645 0.73 +1.5
69,252 + H281DRAFT_05645 0.77 +1.4
69,252 + H281DRAFT_05645 0.77 +0.6
69,291 + H281DRAFT_05645 0.83 +1.1
69,292 - H281DRAFT_05645 0.84 +0.3
69,529 + H281DRAFT_05646 0.61 +0.7
69,529 + H281DRAFT_05646 0.61 -0.7
69,529 + H281DRAFT_05646 0.61 +0.5
69,650 + -1.2
69,661 + +0.9
69,662 - +0.3
69,729 - +1.3
69,737 - +0.6
69,759 + +0.5
69,759 + -0.6
69,851 + -0.3
69,891 + +1.1
69,917 + +0.5
70,187 + H281DRAFT_05647 0.33 -0.7
70,187 + H281DRAFT_05647 0.33 -0.7
70,190 + H281DRAFT_05647 0.33 -0.5

Or see this region's nucleotide sequence