Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05492

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05491 and H281DRAFT_05492 are separated by 20 nucleotidesH281DRAFT_05492 and H281DRAFT_05493 are separated by 12 nucleotides H281DRAFT_05491: H281DRAFT_05491 - Acyl-CoA reductase, at 69,854 to 71,299 _05491 H281DRAFT_05492: H281DRAFT_05492 - putative spermidine/putrescine transport system ATP-binding protein, at 71,320 to 72,438 _05492 H281DRAFT_05493: H281DRAFT_05493 - 4-aminobutyrate---pyruvate transaminase, at 72,451 to 73,839 _05493 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.407 kb on + strand, within H281DRAFT_05491at 70.408 kb on - strand, within H281DRAFT_05491at 70.498 kb on - strand, within H281DRAFT_05491at 70.884 kb on + strand, within H281DRAFT_05491at 70.885 kb on - strand, within H281DRAFT_05491at 70.888 kb on - strand, within H281DRAFT_05491at 70.984 kb on + strand, within H281DRAFT_05491at 71.155 kb on - strandat 71.277 kb on + strandat 71.277 kb on + strandat 71.278 kb on - strandat 71.304 kb on + strandat 71.306 kb on + strandat 71.325 kb on + strandat 71.325 kb on + strandat 71.426 kb on + strandat 71.502 kb on - strand, within H281DRAFT_05492at 71.706 kb on + strand, within H281DRAFT_05492at 71.762 kb on + strand, within H281DRAFT_05492at 71.861 kb on + strand, within H281DRAFT_05492at 71.861 kb on + strand, within H281DRAFT_05492at 71.861 kb on + strand, within H281DRAFT_05492at 71.861 kb on + strand, within H281DRAFT_05492at 71.862 kb on - strand, within H281DRAFT_05492at 71.862 kb on - strand, within H281DRAFT_05492at 71.862 kb on - strand, within H281DRAFT_05492at 71.862 kb on - strand, within H281DRAFT_05492at 71.890 kb on + strand, within H281DRAFT_05492at 71.890 kb on + strand, within H281DRAFT_05492at 71.907 kb on - strand, within H281DRAFT_05492at 72.113 kb on - strand, within H281DRAFT_05492at 72.159 kb on + strand, within H281DRAFT_05492at 72.159 kb on + strand, within H281DRAFT_05492at 72.159 kb on + strand, within H281DRAFT_05492at 72.160 kb on - strand, within H281DRAFT_05492at 72.160 kb on - strand, within H281DRAFT_05492at 72.160 kb on - strand, within H281DRAFT_05492at 72.160 kb on - strand, within H281DRAFT_05492at 72.160 kb on - strand, within H281DRAFT_05492at 72.177 kb on - strand, within H281DRAFT_05492at 72.207 kb on + strand, within H281DRAFT_05492at 72.523 kb on + strandat 72.682 kb on + strand, within H281DRAFT_05493at 72.761 kb on + strand, within H281DRAFT_05493at 72.761 kb on + strand, within H281DRAFT_05493at 72.762 kb on - strand, within H281DRAFT_05493at 72.806 kb on + strand, within H281DRAFT_05493at 72.806 kb on + strand, within H281DRAFT_05493at 72.807 kb on - strand, within H281DRAFT_05493at 72.953 kb on + strand, within H281DRAFT_05493at 72.954 kb on - strand, within H281DRAFT_05493at 72.954 kb on - strand, within H281DRAFT_05493at 73.333 kb on - strand, within H281DRAFT_05493at 73.333 kb on - strand, within H281DRAFT_05493at 73.437 kb on - strand, within H281DRAFT_05493at 73.437 kb on - strand, within H281DRAFT_05493at 73.437 kb on - strand, within H281DRAFT_05493

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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70,407 + H281DRAFT_05491 0.38 +0.5
70,408 - H281DRAFT_05491 0.38 +0.6
70,498 - H281DRAFT_05491 0.45 -0.4
70,884 + H281DRAFT_05491 0.71 -1.1
70,885 - H281DRAFT_05491 0.71 -0.9
70,888 - H281DRAFT_05491 0.72 -0.3
70,984 + H281DRAFT_05491 0.78 -1.6
71,155 - +0.4
71,277 + +0.3
71,277 + -0.3
71,278 - -0.4
71,304 + -0.4
71,306 + -1.8
71,325 + -0.6
71,325 + -0.0
71,426 + -1.0
71,502 - H281DRAFT_05492 0.16 +0.2
71,706 + H281DRAFT_05492 0.34 -0.1
71,762 + H281DRAFT_05492 0.39 +0.0
71,861 + H281DRAFT_05492 0.48 +2.4
71,861 + H281DRAFT_05492 0.48 +0.3
71,861 + H281DRAFT_05492 0.48 +0.6
71,861 + H281DRAFT_05492 0.48 +0.7
71,862 - H281DRAFT_05492 0.48 +0.4
71,862 - H281DRAFT_05492 0.48 +0.2
71,862 - H281DRAFT_05492 0.48 -0.2
71,862 - H281DRAFT_05492 0.48 +1.2
71,890 + H281DRAFT_05492 0.51 -0.1
71,890 + H281DRAFT_05492 0.51 +0.3
71,907 - H281DRAFT_05492 0.52 +0.3
72,113 - H281DRAFT_05492 0.71 -0.1
72,159 + H281DRAFT_05492 0.75 -0.1
72,159 + H281DRAFT_05492 0.75 +0.9
72,159 + H281DRAFT_05492 0.75 +0.2
72,160 - H281DRAFT_05492 0.75 +0.3
72,160 - H281DRAFT_05492 0.75 +0.1
72,160 - H281DRAFT_05492 0.75 -0.2
72,160 - H281DRAFT_05492 0.75 +0.5
72,160 - H281DRAFT_05492 0.75 -0.0
72,177 - H281DRAFT_05492 0.77 +0.9
72,207 + H281DRAFT_05492 0.79 +0.3
72,523 + +0.8
72,682 + H281DRAFT_05493 0.17 +1.7
72,761 + H281DRAFT_05493 0.22 +0.7
72,761 + H281DRAFT_05493 0.22 +0.7
72,762 - H281DRAFT_05493 0.22 -2.0
72,806 + H281DRAFT_05493 0.26 +0.5
72,806 + H281DRAFT_05493 0.26 -0.2
72,807 - H281DRAFT_05493 0.26 +0.7
72,953 + H281DRAFT_05493 0.36 +0.1
72,954 - H281DRAFT_05493 0.36 +0.6
72,954 - H281DRAFT_05493 0.36 +1.1
73,333 - H281DRAFT_05493 0.63 +1.0
73,333 - H281DRAFT_05493 0.63 +0.6
73,437 - H281DRAFT_05493 0.71 +1.1
73,437 - H281DRAFT_05493 0.71 +0.5
73,437 - H281DRAFT_05493 0.71 +1.0

Or see this region's nucleotide sequence