Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05009 and H281DRAFT_05010 overlap by 23 nucleotides H281DRAFT_05010 and H281DRAFT_05011 are separated by 8 nucleotides H281DRAFT_05011 and H281DRAFT_05012 overlap by 4 nucleotides H281DRAFT_05012 and H281DRAFT_05013 are separated by 125 nucleotides
H281DRAFT_05009: H281DRAFT_05009 - type III secretion protein Q, at 194,966 to 196,231
_05009
H281DRAFT_05010: H281DRAFT_05010 - type III secretion protein R, at 196,209 to 196,877
_05010
H281DRAFT_05011: H281DRAFT_05011 - type III secretion protein S, at 196,886 to 197,149
_05011
H281DRAFT_05012: H281DRAFT_05012 - hypothetical protein, at 197,146 to 198,138
_05012
H281DRAFT_05013: H281DRAFT_05013 - type III secretion protein D, at 198,264 to 199,556
_05013
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1 at 196.710 kb on + strand, within H281DRAFT_05010 at 196.711 kb on - strand, within H281DRAFT_05010 at 196.870 kb on - strand at 197.267 kb on - strand, within H281DRAFT_05012 at 197.668 kb on - strand, within H281DRAFT_05012 at 198.290 kb on + strand at 198.418 kb on + strand, within H281DRAFT_05013 at 198.418 kb on + strand, within H281DRAFT_05013 at 198.460 kb on + strand, within H281DRAFT_05013 at 198.583 kb on + strand, within H281DRAFT_05013
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 196,710 + H281DRAFT_05010 0.75 -0.7 196,711 - H281DRAFT_05010 0.75 +1.0 196,870 - -1.2 197,267 - H281DRAFT_05012 0.12 +1.1 197,668 - H281DRAFT_05012 0.53 +0.6 198,290 + +0.4 198,418 + H281DRAFT_05013 0.12 -0.7 198,418 + H281DRAFT_05013 0.12 -0.3 198,460 + H281DRAFT_05013 0.15 +0.2 198,583 + H281DRAFT_05013 0.25 -1.7
Or see this region's nucleotide sequence