Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04989

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04988 and H281DRAFT_04989 are separated by 109 nucleotidesH281DRAFT_04989 and H281DRAFT_04990 are separated by 43 nucleotides H281DRAFT_04988: H281DRAFT_04988 - superoxide dismutase, Fe-Mn family, at 173,506 to 174,255 _04988 H281DRAFT_04989: H281DRAFT_04989 - hypothetical protein, at 174,365 to 175,708 _04989 H281DRAFT_04990: H281DRAFT_04990 - type III secretion translocon protein HrpF, at 175,752 to 177,902 _04990 Position (kb) 174 175 176Strain fitness (log2 ratio) -1 0 1at 173.382 kb on - strandat 173.382 kb on - strandat 173.382 kb on - strandat 173.604 kb on - strand, within H281DRAFT_04988at 173.604 kb on - strand, within H281DRAFT_04988at 173.606 kb on + strand, within H281DRAFT_04988at 174.000 kb on - strand, within H281DRAFT_04988at 174.037 kb on - strand, within H281DRAFT_04988at 174.113 kb on + strand, within H281DRAFT_04988at 174.147 kb on + strand, within H281DRAFT_04988at 174.324 kb on - strandat 174.332 kb on - strandat 174.352 kb on + strandat 174.618 kb on - strand, within H281DRAFT_04989at 174.793 kb on - strand, within H281DRAFT_04989at 174.793 kb on - strand, within H281DRAFT_04989at 175.274 kb on - strand, within H281DRAFT_04989at 175.482 kb on - strand, within H281DRAFT_04989at 175.607 kb on - strandat 176.699 kb on - strand, within H281DRAFT_04990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
173,382 - +1.2
173,382 - -0.1
173,382 - -1.1
173,604 - H281DRAFT_04988 0.13 +0.1
173,604 - H281DRAFT_04988 0.13 -0.4
173,606 + H281DRAFT_04988 0.13 +0.6
174,000 - H281DRAFT_04988 0.66 -0.3
174,037 - H281DRAFT_04988 0.71 +0.2
174,113 + H281DRAFT_04988 0.81 +0.9
174,147 + H281DRAFT_04988 0.85 -0.4
174,324 - -1.1
174,332 - -0.8
174,352 + +0.2
174,618 - H281DRAFT_04989 0.19 +0.3
174,793 - H281DRAFT_04989 0.32 +0.1
174,793 - H281DRAFT_04989 0.32 -1.4
175,274 - H281DRAFT_04989 0.68 -1.4
175,482 - H281DRAFT_04989 0.83 -1.5
175,607 - +0.4
176,699 - H281DRAFT_04990 0.44 +0.1

Or see this region's nucleotide sequence