Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04846

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04845 and H281DRAFT_04846 are separated by 301 nucleotidesH281DRAFT_04846 and H281DRAFT_04847 are separated by 139 nucleotides H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821 _04845 H281DRAFT_04846: H281DRAFT_04846 - Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose), at 288,123 to 288,578 _04846 H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151 _04847 Position (kb) 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.393 kb on - strand, within H281DRAFT_04845at 287.413 kb on - strand, within H281DRAFT_04845at 287.457 kb on + strand, within H281DRAFT_04845at 287.458 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.631 kb on + strand, within H281DRAFT_04845at 287.632 kb on - strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.658 kb on - strand, within H281DRAFT_04845at 287.737 kb on + strandat 287.756 kb on - strandat 287.756 kb on - strandat 287.889 kb on + strandat 287.889 kb on + strandat 287.913 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.930 kb on - strandat 288.027 kb on + strandat 288.027 kb on + strandat 288.028 kb on - strandat 288.028 kb on - strandat 288.117 kb on + strandat 288.118 kb on - strandat 288.118 kb on - strandat 288.305 kb on - strand, within H281DRAFT_04846at 288.324 kb on + strand, within H281DRAFT_04846at 288.420 kb on - strand, within H281DRAFT_04846at 288.423 kb on + strand, within H281DRAFT_04846at 288.468 kb on - strand, within H281DRAFT_04846at 288.518 kb on + strand, within H281DRAFT_04846at 288.578 kb on + strandat 288.578 kb on + strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.603 kb on + strandat 288.664 kb on - strandat 288.664 kb on - strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.780 kb on - strandat 288.780 kb on - strandat 288.843 kb on + strandat 288.843 kb on + strandat 288.844 kb on - strandat 288.860 kb on + strandat 288.861 kb on - strandat 288.861 kb on - strandat 288.993 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.038 kb on - strand, within H281DRAFT_04847at 289.038 kb on - strand, within H281DRAFT_04847at 289.056 kb on - strand, within H281DRAFT_04847at 289.072 kb on + strand, within H281DRAFT_04847at 289.073 kb on - strand, within H281DRAFT_04847at 289.073 kb on - strand, within H281DRAFT_04847at 289.207 kb on + strand, within H281DRAFT_04847at 289.391 kb on + strand, within H281DRAFT_04847at 289.392 kb on - strand, within H281DRAFT_04847at 289.398 kb on + strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.508 kb on + strand, within H281DRAFT_04847at 289.529 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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287,393 - H281DRAFT_04845 0.62 +0.4
287,413 - H281DRAFT_04845 0.64 -0.0
287,457 + H281DRAFT_04845 0.68 +0.3
287,458 - H281DRAFT_04845 0.68 +0.4
287,585 - H281DRAFT_04845 0.79 +0.3
287,585 - H281DRAFT_04845 0.79 +0.8
287,585 - H281DRAFT_04845 0.79 +0.4
287,585 - H281DRAFT_04845 0.79 +1.0
287,585 - H281DRAFT_04845 0.79 -0.2
287,631 + H281DRAFT_04845 0.83 -2.1
287,632 - H281DRAFT_04845 0.83 +0.3
287,647 + H281DRAFT_04845 0.85 +0.9
287,647 + H281DRAFT_04845 0.85 -1.7
287,647 + H281DRAFT_04845 0.85 -0.4
287,648 - H281DRAFT_04845 0.85 +1.2
287,648 - H281DRAFT_04845 0.85 -0.8
287,648 - H281DRAFT_04845 0.85 -0.4
287,658 - H281DRAFT_04845 0.85 +0.2
287,737 + -1.9
287,756 - +0.5
287,756 - +1.3
287,889 + -0.8
287,889 + -1.9
287,913 + -2.6
287,929 + -0.0
287,929 + -1.0
287,929 + -3.5
287,930 - +0.7
288,027 + -0.1
288,027 + +0.9
288,028 - -0.8
288,028 - +0.2
288,117 + -1.9
288,118 - +0.2
288,118 - +0.9
288,305 - H281DRAFT_04846 0.40 +0.2
288,324 + H281DRAFT_04846 0.44 -2.0
288,420 - H281DRAFT_04846 0.65 -2.0
288,423 + H281DRAFT_04846 0.66 -1.2
288,468 - H281DRAFT_04846 0.76 -0.8
288,518 + H281DRAFT_04846 0.87 -0.4
288,578 + -1.8
288,578 + +0.3
288,579 - -1.2
288,579 - -0.3
288,579 - +0.7
288,579 - +1.4
288,603 + +2.5
288,664 - +0.0
288,664 - -0.9
288,668 + -0.4
288,668 + -1.6
288,668 + -3.7
288,669 - -0.1
288,669 - -0.0
288,669 - -0.7
288,669 - -0.4
288,669 - +0.1
288,779 + +0.5
288,779 + -1.3
288,779 + +0.3
288,780 - +0.2
288,780 - +0.3
288,843 + +0.4
288,843 + +1.0
288,844 - +0.9
288,860 + +0.9
288,861 - +1.3
288,861 - -0.3
288,993 + H281DRAFT_04847 0.19 -0.6
289,037 + H281DRAFT_04847 0.22 +1.3
289,037 + H281DRAFT_04847 0.22 +0.4
289,037 + H281DRAFT_04847 0.22 -0.4
289,037 + H281DRAFT_04847 0.22 -0.1
289,038 - H281DRAFT_04847 0.22 +0.9
289,038 - H281DRAFT_04847 0.22 +0.1
289,056 - H281DRAFT_04847 0.24 -0.1
289,072 + H281DRAFT_04847 0.25 +0.0
289,073 - H281DRAFT_04847 0.25 +0.6
289,073 - H281DRAFT_04847 0.25 -0.4
289,207 + H281DRAFT_04847 0.34 -1.5
289,391 + H281DRAFT_04847 0.47 +0.6
289,392 - H281DRAFT_04847 0.47 +0.7
289,398 + H281DRAFT_04847 0.47 -0.0
289,399 - H281DRAFT_04847 0.47 +0.0
289,399 - H281DRAFT_04847 0.47 +0.7
289,399 - H281DRAFT_04847 0.47 +0.4
289,399 - H281DRAFT_04847 0.47 +1.0
289,508 + H281DRAFT_04847 0.55 -1.9
289,529 + H281DRAFT_04847 0.57 +0.3
289,571 + H281DRAFT_04847 0.59 -0.7
289,571 + H281DRAFT_04847 0.59 -0.7
289,571 + H281DRAFT_04847 0.59 +0.2

Or see this region's nucleotide sequence