Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04694

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04693 and H281DRAFT_04694 are separated by 330 nucleotidesH281DRAFT_04694 and H281DRAFT_04695 are separated by 167 nucleotides H281DRAFT_04693: H281DRAFT_04693 - NAD+ kinase, at 105,616 to 106,518 _04693 H281DRAFT_04694: H281DRAFT_04694 - heat-inducible transcription repressor HrcA, at 106,849 to 107,868 _04694 H281DRAFT_04695: H281DRAFT_04695 - ferrochelatase, at 108,036 to 109,106 _04695 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 106.528 kb on - strandat 106.528 kb on - strandat 106.528 kb on - strandat 106.528 kb on - strandat 106.528 kb on - strandat 106.528 kb on - strandat 106.534 kb on + strandat 106.534 kb on + strandat 106.535 kb on - strandat 106.535 kb on - strandat 106.535 kb on - strandat 106.535 kb on - strandat 106.538 kb on + strandat 106.538 kb on + strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.604 kb on + strandat 106.604 kb on + strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.617 kb on + strandat 106.819 kb on - strandat 106.819 kb on - strandat 106.853 kb on + strandat 106.853 kb on + strandat 106.897 kb on + strandat 106.897 kb on + strandat 106.897 kb on + strandat 106.898 kb on - strandat 107.025 kb on + strand, within H281DRAFT_04694at 107.025 kb on + strand, within H281DRAFT_04694at 107.026 kb on - strand, within H281DRAFT_04694at 107.136 kb on + strand, within H281DRAFT_04694at 107.136 kb on + strand, within H281DRAFT_04694at 107.137 kb on - strand, within H281DRAFT_04694at 107.383 kb on + strand, within H281DRAFT_04694at 107.383 kb on + strand, within H281DRAFT_04694at 107.383 kb on + strand, within H281DRAFT_04694at 107.384 kb on - strand, within H281DRAFT_04694at 107.384 kb on - strand, within H281DRAFT_04694at 107.384 kb on - strandat 107.741 kb on - strand, within H281DRAFT_04694at 107.801 kb on - strandat 107.897 kb on + strandat 107.897 kb on + strandat 107.898 kb on - strandat 107.898 kb on - strandat 107.981 kb on - strandat 108.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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106,528 - +2.1
106,528 - +0.5
106,528 - -0.2
106,528 - +1.3
106,528 - -0.7
106,528 - -0.3
106,534 + -0.8
106,534 + -0.4
106,535 - -0.0
106,535 - +1.5
106,535 - -0.7
106,535 - +0.6
106,538 + -2.4
106,538 + +0.2
106,539 - +0.1
106,539 - -1.3
106,539 - +0.9
106,604 + +0.6
106,604 + -0.6
106,611 + -1.7
106,611 + -0.7
106,617 + -0.8
106,819 - +0.1
106,819 - -0.9
106,853 + -1.3
106,853 + -1.3
106,897 + -1.2
106,897 + -0.9
106,897 + +0.1
106,898 - -1.4
107,025 + H281DRAFT_04694 0.17 -2.5
107,025 + H281DRAFT_04694 0.17 -2.0
107,026 - H281DRAFT_04694 0.17 -0.9
107,136 + H281DRAFT_04694 0.28 -2.1
107,136 + H281DRAFT_04694 0.28 +2.8
107,137 - H281DRAFT_04694 0.28 -0.6
107,383 + H281DRAFT_04694 0.52 -1.1
107,383 + H281DRAFT_04694 0.52 -0.9
107,383 + H281DRAFT_04694 0.52 +0.7
107,384 - H281DRAFT_04694 0.52 -1.5
107,384 - H281DRAFT_04694 0.52 -1.1
107,384 - -2.4
107,741 - H281DRAFT_04694 0.87 -3.6
107,801 - -0.8
107,897 + +1.8
107,897 + -0.4
107,898 - +0.2
107,898 - +1.0
107,981 - +0.3
108,035 + +0.5

Or see this region's nucleotide sequence