Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04347

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04346 and H281DRAFT_04347 are separated by 101 nucleotidesH281DRAFT_04347 and H281DRAFT_04348 are separated by 172 nucleotides H281DRAFT_04346: H281DRAFT_04346 - uncharacterized protein, at 64,521 to 65,165 _04346 H281DRAFT_04347: H281DRAFT_04347 - LSU ribosomal protein L32P, at 65,267 to 65,446 _04347 H281DRAFT_04348: H281DRAFT_04348 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 65,619 to 66,725 _04348 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.306 kb on + strandat 64.416 kb on + strandat 64.416 kb on + strandat 64.473 kb on + strandat 64.645 kb on + strand, within H281DRAFT_04346at 64.645 kb on + strand, within H281DRAFT_04346at 64.755 kb on + strand, within H281DRAFT_04346

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
64,306 + +0.6
64,416 + +0.0
64,416 + +1.3
64,473 + -0.1
64,645 + H281DRAFT_04346 0.19 -2.7
64,645 + H281DRAFT_04346 0.19 -1.3
64,755 + H281DRAFT_04346 0.36 -1.3

Or see this region's nucleotide sequence