Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03125

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03124 and H281DRAFT_03125 are separated by 156 nucleotidesH281DRAFT_03125 and H281DRAFT_03126 overlap by 4 nucleotidesH281DRAFT_03126 and H281DRAFT_03127 are separated by 1 nucleotides H281DRAFT_03124: H281DRAFT_03124 - outer membrane porin, OprD family, at 157,103 to 158,665 _03124 H281DRAFT_03125: H281DRAFT_03125 - oligopeptide transport system ATP-binding protein, at 158,822 to 159,820 _03125 H281DRAFT_03126: H281DRAFT_03126 - oligopeptide transport system ATP-binding protein, at 159,817 to 160,818 _03126 H281DRAFT_03127: H281DRAFT_03127 - oligopeptide transport system permease protein, at 160,820 to 161,734 _03127 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 158.056 kb on - strand, within H281DRAFT_03124at 158.056 kb on - strand, within H281DRAFT_03124at 158.215 kb on - strand, within H281DRAFT_03124at 158.250 kb on + strand, within H281DRAFT_03124at 158.656 kb on + strandat 158.807 kb on + strandat 159.821 kb on - strandat 159.821 kb on - strandat 160.074 kb on - strand, within H281DRAFT_03126at 160.136 kb on + strand, within H281DRAFT_03126at 160.136 kb on + strand, within H281DRAFT_03126at 160.137 kb on - strand, within H281DRAFT_03126at 160.371 kb on - strand, within H281DRAFT_03126

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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158,056 - H281DRAFT_03124 0.61 -0.2
158,056 - H281DRAFT_03124 0.61 +0.5
158,215 - H281DRAFT_03124 0.71 +0.1
158,250 + H281DRAFT_03124 0.73 +0.2
158,656 + -3.8
158,807 + +0.1
159,821 - -0.0
159,821 - +0.2
160,074 - H281DRAFT_03126 0.26 +0.0
160,136 + H281DRAFT_03126 0.32 +0.2
160,136 + H281DRAFT_03126 0.32 -0.7
160,137 - H281DRAFT_03126 0.32 +0.5
160,371 - H281DRAFT_03126 0.55 +0.1

Or see this region's nucleotide sequence