Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03124

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03123 and H281DRAFT_03124 are separated by 80 nucleotidesH281DRAFT_03124 and H281DRAFT_03125 are separated by 156 nucleotides H281DRAFT_03123: H281DRAFT_03123 - transcriptional regulator, IclR family, at 156,123 to 157,022 _03123 H281DRAFT_03124: H281DRAFT_03124 - outer membrane porin, OprD family, at 157,103 to 158,665 _03124 H281DRAFT_03125: H281DRAFT_03125 - oligopeptide transport system ATP-binding protein, at 158,822 to 159,820 _03125 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 157.104 kb on + strandat 157.104 kb on + strandat 157.170 kb on + strandat 157.237 kb on + strandat 157.239 kb on + strandat 157.240 kb on - strandat 157.413 kb on + strand, within H281DRAFT_03124at 157.429 kb on + strand, within H281DRAFT_03124at 157.494 kb on + strand, within H281DRAFT_03124at 157.785 kb on + strand, within H281DRAFT_03124at 157.806 kb on + strand, within H281DRAFT_03124at 158.056 kb on - strand, within H281DRAFT_03124at 158.056 kb on - strand, within H281DRAFT_03124at 158.215 kb on - strand, within H281DRAFT_03124at 158.250 kb on + strand, within H281DRAFT_03124at 158.656 kb on + strandat 158.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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157,104 + +0.3
157,104 + -1.2
157,170 + -1.0
157,237 + -1.1
157,239 + -0.9
157,240 - +1.2
157,413 + H281DRAFT_03124 0.20 +0.9
157,429 + H281DRAFT_03124 0.21 -0.2
157,494 + H281DRAFT_03124 0.25 +0.6
157,785 + H281DRAFT_03124 0.44 -0.5
157,806 + H281DRAFT_03124 0.45 +0.5
158,056 - H281DRAFT_03124 0.61 -0.2
158,056 - H281DRAFT_03124 0.61 +0.5
158,215 - H281DRAFT_03124 0.71 +0.1
158,250 + H281DRAFT_03124 0.73 +0.2
158,656 + -3.8
158,807 + +0.1

Or see this region's nucleotide sequence