Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02556

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02555 and H281DRAFT_02556 are separated by 81 nucleotidesH281DRAFT_02556 and H281DRAFT_02557 are separated by 74 nucleotides H281DRAFT_02555: H281DRAFT_02555 - hypothetical protein, at 128,588 to 129,046 _02555 H281DRAFT_02556: H281DRAFT_02556 - Outer membrane protein (porin), at 129,128 to 130,351 _02556 H281DRAFT_02557: H281DRAFT_02557 - Beta-barrel assembly machine subunit BamA, at 130,426 to 132,735 _02557 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.178 kb on + strandat 128.178 kb on + strandat 128.178 kb on + strandat 128.179 kb on - strandat 128.179 kb on - strandat 128.305 kb on + strandat 128.502 kb on + strandat 128.524 kb on - strandat 128.632 kb on + strandat 129.107 kb on + strandat 129.108 kb on - strandat 129.512 kb on + strand, within H281DRAFT_02556at 129.681 kb on - strand, within H281DRAFT_02556at 130.428 kb on - strandat 130.584 kb on + strandat 130.601 kb on - strandat 130.787 kb on + strand, within H281DRAFT_02557at 130.787 kb on + strand, within H281DRAFT_02557at 130.913 kb on + strand, within H281DRAFT_02557at 131.116 kb on + strand, within H281DRAFT_02557at 131.133 kb on - strand, within H281DRAFT_02557at 131.216 kb on + strand, within H281DRAFT_02557

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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128,178 + -0.2
128,178 + +0.2
128,178 + -1.0
128,179 - +1.5
128,179 - -0.1
128,305 + -1.9
128,502 + +0.2
128,524 - -0.2
128,632 + -0.2
129,107 + +0.8
129,108 - +0.5
129,512 + H281DRAFT_02556 0.31 -0.4
129,681 - H281DRAFT_02556 0.45 +0.2
130,428 - +0.0
130,584 + -0.3
130,601 - -0.2
130,787 + H281DRAFT_02557 0.16 +0.5
130,787 + H281DRAFT_02557 0.16 +0.3
130,913 + H281DRAFT_02557 0.21 -0.2
131,116 + H281DRAFT_02557 0.30 +0.1
131,133 - H281DRAFT_02557 0.31 +0.9
131,216 + H281DRAFT_02557 0.34 -0.0

Or see this region's nucleotide sequence