Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01972 and H281DRAFT_01973 are separated by 3 nucleotides H281DRAFT_01973 and H281DRAFT_01974 are separated by 43 nucleotides H281DRAFT_01974 and H281DRAFT_01975 are separated by 359 nucleotides
H281DRAFT_01972: H281DRAFT_01972 - Anthranilate phosphoribosyltransferase, at 90,255 to 91,229
_01972
H281DRAFT_01973: H281DRAFT_01973 - protein of unknown function (DUF4440), at 91,233 to 91,616
_01973
H281DRAFT_01974: H281DRAFT_01974 - Lipid A 3-O-deacylase (PagL), at 91,660 to 92,223
_01974
H281DRAFT_01975: H281DRAFT_01975 - RNA polymerase, sigma 32 subunit, RpoH, at 92,583 to 93,518
_01975
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1 at 90.830 kb on + strand, within H281DRAFT_01972 at 90.830 kb on + strand, within H281DRAFT_01972 at 90.830 kb on + strand, within H281DRAFT_01972 at 90.831 kb on - strand, within H281DRAFT_01972 at 90.885 kb on + strand, within H281DRAFT_01972 at 90.886 kb on - strand, within H281DRAFT_01972 at 90.886 kb on - strand, within H281DRAFT_01972 at 90.922 kb on + strand, within H281DRAFT_01972 at 90.922 kb on + strand, within H281DRAFT_01972 at 90.923 kb on - strand, within H281DRAFT_01972 at 90.923 kb on - strand, within H281DRAFT_01972 at 90.923 kb on - strand, within H281DRAFT_01972 at 90.923 kb on - strand, within H281DRAFT_01972 at 90.926 kb on + strand, within H281DRAFT_01972 at 90.926 kb on + strand, within H281DRAFT_01972 at 90.926 kb on + strand, within H281DRAFT_01972 at 90.927 kb on - strand, within H281DRAFT_01972 at 90.927 kb on - strand, within H281DRAFT_01972 at 90.927 kb on - strand, within H281DRAFT_01972 at 91.212 kb on - strand at 91.309 kb on + strand, within H281DRAFT_01973 at 91.310 kb on - strand, within H281DRAFT_01973 at 91.310 kb on - strand, within H281DRAFT_01973 at 91.504 kb on + strand, within H281DRAFT_01973 at 91.505 kb on - strand, within H281DRAFT_01973 at 91.505 kb on - strand, within H281DRAFT_01973 at 91.505 kb on - strand, within H281DRAFT_01973 at 91.505 kb on - strand, within H281DRAFT_01973 at 91.668 kb on + strand at 91.668 kb on + strand at 91.668 kb on + strand at 91.669 kb on - strand at 91.669 kb on - strand at 91.669 kb on - strand at 91.669 kb on - strand at 91.669 kb on - strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.670 kb on + strand at 91.671 kb on - strand at 91.671 kb on - strand at 91.671 kb on - strand at 91.671 kb on - strand at 91.671 kb on - strand at 91.679 kb on + strand at 91.679 kb on + strand at 91.679 kb on + strand at 91.679 kb on + strand at 91.679 kb on + strand at 91.679 kb on + strand at 91.680 kb on - strand at 91.680 kb on - strand at 91.680 kb on - strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.682 kb on - strand at 91.697 kb on - strand at 91.760 kb on + strand, within H281DRAFT_01974 at 91.929 kb on + strand, within H281DRAFT_01974 at 91.930 kb on - strand, within H281DRAFT_01974 at 92.101 kb on + strand, within H281DRAFT_01974 at 92.101 kb on + strand, within H281DRAFT_01974 at 92.258 kb on - strand at 92.274 kb on + strand at 92.327 kb on + strand at 92.327 kb on + strand at 92.331 kb on + strand at 92.331 kb on + strand at 92.332 kb on - strand at 92.338 kb on + strand at 92.338 kb on + strand at 92.394 kb on + strand at 92.424 kb on + strand at 92.424 kb on + strand at 92.424 kb on + strand at 92.433 kb on + strand at 92.433 kb on + strand at 92.489 kb on + strand at 92.489 kb on + strand at 92.490 kb on - strand at 92.493 kb on + strand at 92.493 kb on + strand at 92.494 kb on - strand at 92.496 kb on + strand at 92.497 kb on - strand at 92.497 kb on - strand at 92.497 kb on - strand at 92.519 kb on + strand at 92.519 kb on + strand at 92.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 90,830 + H281DRAFT_01972 0.59 -0.3 90,830 + H281DRAFT_01972 0.59 +0.3 90,830 + H281DRAFT_01972 0.59 +0.0 90,831 - H281DRAFT_01972 0.59 +0.4 90,885 + H281DRAFT_01972 0.65 -0.2 90,886 - H281DRAFT_01972 0.65 -0.4 90,886 - H281DRAFT_01972 0.65 -0.5 90,922 + H281DRAFT_01972 0.68 -1.1 90,922 + H281DRAFT_01972 0.68 -0.4 90,923 - H281DRAFT_01972 0.69 -1.2 90,923 - H281DRAFT_01972 0.69 -0.5 90,923 - H281DRAFT_01972 0.69 +0.2 90,923 - H281DRAFT_01972 0.69 -0.3 90,926 + H281DRAFT_01972 0.69 +0.1 90,926 + H281DRAFT_01972 0.69 -1.6 90,926 + H281DRAFT_01972 0.69 +0.3 90,927 - H281DRAFT_01972 0.69 -1.6 90,927 - H281DRAFT_01972 0.69 -1.7 90,927 - H281DRAFT_01972 0.69 -0.4 91,212 - -0.1 91,309 + H281DRAFT_01973 0.20 +1.1 91,310 - H281DRAFT_01973 0.20 +0.5 91,310 - H281DRAFT_01973 0.20 -0.2 91,504 + H281DRAFT_01973 0.71 +0.6 91,505 - H281DRAFT_01973 0.71 +1.2 91,505 - H281DRAFT_01973 0.71 +0.7 91,505 - H281DRAFT_01973 0.71 +0.8 91,505 - H281DRAFT_01973 0.71 +0.4 91,668 + -0.2 91,668 + +0.2 91,668 + +1.4 91,669 - +0.6 91,669 - -0.2 91,669 - -1.2 91,669 - -0.3 91,669 - -0.1 91,670 + -0.3 91,670 + +0.4 91,670 + +0.8 91,670 + +0.1 91,670 + +0.6 91,670 + -0.1 91,670 + +0.4 91,670 + +0.3 91,671 - +0.5 91,671 - +0.5 91,671 - -0.3 91,671 - -1.0 91,671 - +0.5 91,679 + -0.2 91,679 + +1.3 91,679 + -0.2 91,679 + +1.1 91,679 + -2.6 91,679 + +0.3 91,680 - -1.1 91,680 - +0.9 91,680 - -0.2 91,681 + +0.7 91,681 + +0.6 91,681 + -1.2 91,681 + +0.8 91,681 + +0.1 91,681 + +0.3 91,682 - -0.7 91,697 - -0.7 91,760 + H281DRAFT_01974 0.18 +1.4 91,929 + H281DRAFT_01974 0.48 +0.9 91,930 - H281DRAFT_01974 0.48 +1.2 92,101 + H281DRAFT_01974 0.78 -0.5 92,101 + H281DRAFT_01974 0.78 +0.3 92,258 - +0.8 92,274 + -1.0 92,327 + -0.3 92,327 + -0.9 92,331 + -1.8 92,331 + +0.3 92,332 - +0.8 92,338 + -2.3 92,338 + -0.6 92,394 + -0.8 92,424 + +0.9 92,424 + +0.6 92,424 + -0.5 92,433 + +0.9 92,433 + -0.5 92,489 + +0.0 92,489 + +1.0 92,490 - +0.4 92,493 + +0.4 92,493 + -0.3 92,494 - +0.4 92,496 + +0.3 92,497 - -0.2 92,497 - -1.0 92,497 - -0.1 92,519 + -0.0 92,519 + +0.4 92,578 + -0.3
Or see this region's nucleotide sequence