Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01955

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01953 and H281DRAFT_01954 are separated by 64 nucleotidesH281DRAFT_01954 and H281DRAFT_01955 are separated by 137 nucleotidesH281DRAFT_01955 and H281DRAFT_01956 are separated by 94 nucleotidesH281DRAFT_01956 and H281DRAFT_01957 are separated by 57 nucleotides H281DRAFT_01953: H281DRAFT_01953 - hypothetical protein, at 73,459 to 74,199 _01953 H281DRAFT_01954: H281DRAFT_01954 - hypothetical protein, at 74,264 to 74,542 _01954 H281DRAFT_01955: H281DRAFT_01955 - hypothetical protein, at 74,680 to 75,309 _01955 H281DRAFT_01956: H281DRAFT_01956 - hypothetical protein, at 75,404 to 75,751 _01956 H281DRAFT_01957: H281DRAFT_01957 - Outer membrane protein (porin), at 75,809 to 76,450 _01957 Position (kb) 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 73.710 kb on + strand, within H281DRAFT_01953at 73.711 kb on - strand, within H281DRAFT_01953at 73.711 kb on - strand, within H281DRAFT_01953at 73.711 kb on - strand, within H281DRAFT_01953at 73.711 kb on - strand, within H281DRAFT_01953at 73.713 kb on + strand, within H281DRAFT_01953at 73.713 kb on + strand, within H281DRAFT_01953at 73.713 kb on + strand, within H281DRAFT_01953at 73.714 kb on - strand, within H281DRAFT_01953at 73.714 kb on - strand, within H281DRAFT_01953at 73.714 kb on - strand, within H281DRAFT_01953at 73.714 kb on - strand, within H281DRAFT_01953at 73.714 kb on - strand, within H281DRAFT_01953at 73.715 kb on + strand, within H281DRAFT_01953at 73.715 kb on + strand, within H281DRAFT_01953at 73.716 kb on - strand, within H281DRAFT_01953at 73.716 kb on - strand, within H281DRAFT_01953at 73.790 kb on + strand, within H281DRAFT_01953at 73.790 kb on + strand, within H281DRAFT_01953at 73.790 kb on + strand, within H281DRAFT_01953at 73.790 kb on + strand, within H281DRAFT_01953at 73.791 kb on - strand, within H281DRAFT_01953at 73.791 kb on - strand, within H281DRAFT_01953at 73.791 kb on - strand, within H281DRAFT_01953at 73.791 kb on - strand, within H281DRAFT_01953at 73.791 kb on - strand, within H281DRAFT_01953at 73.837 kb on + strand, within H281DRAFT_01953at 73.951 kb on + strand, within H281DRAFT_01953at 73.952 kb on - strand, within H281DRAFT_01953at 73.994 kb on + strand, within H281DRAFT_01953at 73.994 kb on + strand, within H281DRAFT_01953at 73.994 kb on + strand, within H281DRAFT_01953at 73.995 kb on - strand, within H281DRAFT_01953at 74.011 kb on - strand, within H281DRAFT_01953at 74.092 kb on + strand, within H281DRAFT_01953at 74.092 kb on - strand, within H281DRAFT_01953at 74.093 kb on - strand, within H281DRAFT_01953at 74.128 kb on + strandat 74.128 kb on + strandat 74.129 kb on - strandat 74.129 kb on - strandat 74.276 kb on - strandat 74.293 kb on + strand, within H281DRAFT_01954at 74.356 kb on + strand, within H281DRAFT_01954at 74.384 kb on - strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.448 kb on + strand, within H281DRAFT_01954at 74.449 kb on - strand, within H281DRAFT_01954at 74.453 kb on - strand, within H281DRAFT_01954at 74.459 kb on + strand, within H281DRAFT_01954at 74.460 kb on - strand, within H281DRAFT_01954at 74.462 kb on - strand, within H281DRAFT_01954at 74.465 kb on + strand, within H281DRAFT_01954at 74.466 kb on - strand, within H281DRAFT_01954at 74.489 kb on - strand, within H281DRAFT_01954at 74.598 kb on + strandat 74.598 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.672 kb on + strandat 74.681 kb on + strandat 74.681 kb on + strandat 74.711 kb on + strandat 74.711 kb on + strandat 74.711 kb on + strandat 74.712 kb on - strandat 74.712 kb on - strandat 74.757 kb on + strand, within H281DRAFT_01955at 74.757 kb on + strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.766 kb on + strand, within H281DRAFT_01955at 74.766 kb on + strandat 74.767 kb on - strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.968 kb on - strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.017 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.027 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.156 kb on + strand, within H281DRAFT_01955at 75.157 kb on - strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.351 kb on + strandat 75.352 kb on - strandat 75.352 kb on - strandat 75.399 kb on - strandat 75.399 kb on - strandat 75.425 kb on + strandat 75.469 kb on + strand, within H281DRAFT_01956at 75.504 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.939 kb on + strand, within H281DRAFT_01957at 75.940 kb on - strand, within H281DRAFT_01957at 76.020 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.117 kb on + strandat 76.117 kb on + strand, within H281DRAFT_01957at 76.165 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.186 kb on - strand, within H281DRAFT_01957at 76.194 kb on + strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
73,710 + H281DRAFT_01953 0.34 -0.6
73,711 - H281DRAFT_01953 0.34 +0.2
73,711 - H281DRAFT_01953 0.34 +0.5
73,711 - H281DRAFT_01953 0.34 -0.5
73,711 - H281DRAFT_01953 0.34 -0.4
73,713 + H281DRAFT_01953 0.34 -1.1
73,713 + H281DRAFT_01953 0.34 -0.7
73,713 + H281DRAFT_01953 0.34 -0.6
73,714 - H281DRAFT_01953 0.34 +0.3
73,714 - H281DRAFT_01953 0.34 +0.7
73,714 - H281DRAFT_01953 0.34 +0.8
73,714 - H281DRAFT_01953 0.34 -0.5
73,714 - H281DRAFT_01953 0.34 -0.2
73,715 + H281DRAFT_01953 0.35 +1.6
73,715 + H281DRAFT_01953 0.35 +0.8
73,716 - H281DRAFT_01953 0.35 -0.2
73,716 - H281DRAFT_01953 0.35 +1.0
73,790 + H281DRAFT_01953 0.45 -0.2
73,790 + H281DRAFT_01953 0.45 -1.2
73,790 + H281DRAFT_01953 0.45 +0.5
73,790 + H281DRAFT_01953 0.45 +0.5
73,791 - H281DRAFT_01953 0.45 -0.1
73,791 - H281DRAFT_01953 0.45 +0.5
73,791 - H281DRAFT_01953 0.45 -2.9
73,791 - H281DRAFT_01953 0.45 +0.4
73,791 - H281DRAFT_01953 0.45 +0.4
73,837 + H281DRAFT_01953 0.51 -0.0
73,951 + H281DRAFT_01953 0.66 -0.0
73,952 - H281DRAFT_01953 0.67 -0.1
73,994 + H281DRAFT_01953 0.72 +1.1
73,994 + H281DRAFT_01953 0.72 -0.1
73,994 + H281DRAFT_01953 0.72 -0.1
73,995 - H281DRAFT_01953 0.72 -1.0
74,011 - H281DRAFT_01953 0.74 +0.8
74,092 + H281DRAFT_01953 0.85 +0.7
74,092 - H281DRAFT_01953 0.85 -0.2
74,093 - H281DRAFT_01953 0.86 +2.0
74,128 + -0.4
74,128 + +0.6
74,129 - +0.6
74,129 - -0.3
74,276 - -0.0
74,293 + H281DRAFT_01954 0.10 +0.0
74,356 + H281DRAFT_01954 0.33 +0.6
74,384 - H281DRAFT_01954 0.43 +1.1
74,422 + H281DRAFT_01954 0.57 +0.1
74,422 + H281DRAFT_01954 0.57 -0.1
74,422 + H281DRAFT_01954 0.57 -0.4
74,422 + H281DRAFT_01954 0.57 -0.4
74,448 + H281DRAFT_01954 0.66 -0.2
74,449 - H281DRAFT_01954 0.66 +0.5
74,453 - H281DRAFT_01954 0.68 +0.5
74,459 + H281DRAFT_01954 0.70 -0.5
74,460 - H281DRAFT_01954 0.70 -0.4
74,462 - H281DRAFT_01954 0.71 +0.2
74,465 + H281DRAFT_01954 0.72 +0.1
74,466 - H281DRAFT_01954 0.72 +0.5
74,489 - H281DRAFT_01954 0.81 -2.3
74,598 + -1.4
74,598 + -1.2
74,607 + +0.3
74,607 + +1.3
74,672 + -2.6
74,681 + +0.0
74,681 + -0.6
74,711 + +0.2
74,711 + -1.2
74,711 + +0.0
74,712 - +1.5
74,712 - +0.1
74,757 + H281DRAFT_01955 0.12 -0.2
74,757 + H281DRAFT_01955 0.12 -0.0
74,758 - H281DRAFT_01955 0.12 +0.1
74,758 - H281DRAFT_01955 0.12 +0.6
74,758 - H281DRAFT_01955 0.12 -0.1
74,766 + H281DRAFT_01955 0.14 -0.2
74,766 + +0.4
74,767 - H281DRAFT_01955 0.14 -0.2
74,810 + H281DRAFT_01955 0.21 -0.3
74,810 + H281DRAFT_01955 0.21 +0.0
74,810 + H281DRAFT_01955 0.21 +1.8
74,810 + H281DRAFT_01955 0.21 +0.1
74,810 + H281DRAFT_01955 0.21 -1.0
74,810 + H281DRAFT_01955 0.21 +0.1
74,810 + H281DRAFT_01955 0.21 +0.5
74,811 - H281DRAFT_01955 0.21 +0.6
74,811 - H281DRAFT_01955 0.21 -1.8
74,811 - H281DRAFT_01955 0.21 -0.4
74,811 - H281DRAFT_01955 0.21 +0.6
74,811 - H281DRAFT_01955 0.21 +0.6
74,880 + H281DRAFT_01955 0.32 -1.2
74,880 + H281DRAFT_01955 0.32 +0.5
74,881 - H281DRAFT_01955 0.32 +0.6
74,881 - H281DRAFT_01955 0.32 +1.4
74,967 + H281DRAFT_01955 0.46 -0.3
74,967 + H281DRAFT_01955 0.46 +0.3
74,968 - H281DRAFT_01955 0.46 +0.4
75,015 + H281DRAFT_01955 0.53 +0.6
75,015 + H281DRAFT_01955 0.53 +0.4
75,015 + H281DRAFT_01955 0.53 +0.4
75,015 + H281DRAFT_01955 0.53 +0.9
75,016 - H281DRAFT_01955 0.53 +0.1
75,016 - H281DRAFT_01955 0.53 -0.5
75,016 - H281DRAFT_01955 0.53 +0.2
75,016 - H281DRAFT_01955 0.53 +0.0
75,016 - H281DRAFT_01955 0.53 -0.2
75,016 - H281DRAFT_01955 0.53 -0.9
75,017 + H281DRAFT_01955 0.53 -0.1
75,026 + H281DRAFT_01955 0.55 -0.9
75,026 + H281DRAFT_01955 0.55 +0.9
75,027 - H281DRAFT_01955 0.55 +0.6
75,090 - H281DRAFT_01955 0.65 +1.0
75,090 - H281DRAFT_01955 0.65 +0.5
75,156 + H281DRAFT_01955 0.76 +0.9
75,157 - H281DRAFT_01955 0.76 -0.2
75,196 + H281DRAFT_01955 0.82 -2.5
75,196 + H281DRAFT_01955 0.82 -0.0
75,298 + +0.1
75,298 + -1.6
75,298 + +1.2
75,298 + +0.1
75,299 - +1.4
75,299 - +0.8
75,299 - +1.0
75,299 - +1.1
75,320 + +0.8
75,320 + +0.2
75,320 + -0.1
75,320 + -0.2
75,351 + +0.9
75,352 - +1.5
75,352 - -0.3
75,399 - -0.6
75,399 - +0.1
75,425 + -0.5
75,469 + H281DRAFT_01956 0.19 -0.4
75,504 + H281DRAFT_01956 0.29 -0.5
75,516 + H281DRAFT_01956 0.32 -0.0
75,516 + H281DRAFT_01956 0.32 -0.1
75,516 + H281DRAFT_01956 0.32 +0.8
75,517 - H281DRAFT_01956 0.32 -0.0
75,517 - H281DRAFT_01956 0.32 -0.4
75,517 - H281DRAFT_01956 0.32 +0.7
75,517 - H281DRAFT_01956 0.32 -1.6
75,597 + H281DRAFT_01956 0.55 +0.9
75,597 + H281DRAFT_01956 0.55 -0.3
75,597 + H281DRAFT_01956 0.55 -0.6
75,597 + H281DRAFT_01956 0.55 +0.0
75,597 + H281DRAFT_01956 0.55 -1.1
75,597 + H281DRAFT_01956 0.55 +0.2
75,598 - H281DRAFT_01956 0.56 +0.5
75,598 - H281DRAFT_01956 0.56 -0.2
75,598 - H281DRAFT_01956 0.56 +1.3
75,598 - H281DRAFT_01956 0.56 +1.2
75,598 - H281DRAFT_01956 0.56 -1.6
75,598 - H281DRAFT_01956 0.56 +0.2
75,598 - H281DRAFT_01956 0.56 -0.1
75,598 - H281DRAFT_01956 0.56 +0.2
75,598 - H281DRAFT_01956 0.56 +0.3
75,598 - H281DRAFT_01956 0.56 +0.5
75,912 + H281DRAFT_01957 0.16 +0.7
75,912 + H281DRAFT_01957 0.16 -1.8
75,912 + H281DRAFT_01957 0.16 +0.3
75,912 + H281DRAFT_01957 0.16 +0.2
75,912 + H281DRAFT_01957 0.16 -0.3
75,913 - H281DRAFT_01957 0.16 -0.4
75,913 - H281DRAFT_01957 0.16 +0.8
75,919 + H281DRAFT_01957 0.17 -0.4
75,919 + H281DRAFT_01957 0.17 +0.3
75,919 + H281DRAFT_01957 0.17 -1.4
75,919 + H281DRAFT_01957 0.17 -0.2
75,919 + H281DRAFT_01957 0.17 +0.7
75,920 - H281DRAFT_01957 0.17 -0.2
75,920 - H281DRAFT_01957 0.17 +0.4
75,920 - H281DRAFT_01957 0.17 -1.0
75,920 - H281DRAFT_01957 0.17 +2.7
75,939 + H281DRAFT_01957 0.20 -0.0
75,940 - H281DRAFT_01957 0.20 +0.3
76,020 + H281DRAFT_01957 0.33 +0.0
76,023 + H281DRAFT_01957 0.33 +0.8
76,023 + H281DRAFT_01957 0.33 +0.4
76,023 + H281DRAFT_01957 0.33 -2.0
76,024 - H281DRAFT_01957 0.33 +0.4
76,024 - H281DRAFT_01957 0.33 -0.1
76,024 - H281DRAFT_01957 0.33 +0.4
76,044 - H281DRAFT_01957 0.37 +0.8
76,044 - H281DRAFT_01957 0.37 +0.6
76,117 + -1.2
76,117 + H281DRAFT_01957 0.48 -0.4
76,165 + H281DRAFT_01957 0.55 -1.7
76,183 + H281DRAFT_01957 0.58 -0.0
76,183 + H281DRAFT_01957 0.58 +0.3
76,183 + H281DRAFT_01957 0.58 +0.2
76,184 - H281DRAFT_01957 0.58 -0.1
76,184 - H281DRAFT_01957 0.58 +0.2
76,185 + H281DRAFT_01957 0.59 -1.6
76,185 + H281DRAFT_01957 0.59 -0.3
76,185 + H281DRAFT_01957 0.59 -0.4
76,185 + H281DRAFT_01957 0.59 -0.9
76,185 + H281DRAFT_01957 0.59 +0.2
76,185 + H281DRAFT_01957 0.59 +0.6
76,186 - H281DRAFT_01957 0.59 +0.3
76,194 + H281DRAFT_01957 0.60 +0.1
76,195 - H281DRAFT_01957 0.60 -2.8
76,195 - H281DRAFT_01957 0.60 -0.3

Or see this region's nucleotide sequence