Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01946

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01945 and H281DRAFT_01946 are separated by 0 nucleotidesH281DRAFT_01946 and H281DRAFT_01947 are separated by 249 nucleotidesH281DRAFT_01947 and H281DRAFT_01948 are separated by 8 nucleotides H281DRAFT_01945: H281DRAFT_01945 - Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain, at 64,033 to 65,052 _01945 H281DRAFT_01946: H281DRAFT_01946 - hypothetical protein, at 65,053 to 65,724 _01946 H281DRAFT_01947: H281DRAFT_01947 - hypothetical protein, at 65,974 to 66,240 _01947 H281DRAFT_01948: H281DRAFT_01948 - Tetratricopeptide repeat-containing protein, at 66,249 to 68,051 _01948 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 64.174 kb on + strand, within H281DRAFT_01945at 64.221 kb on + strand, within H281DRAFT_01945at 64.292 kb on - strand, within H281DRAFT_01945at 64.292 kb on - strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.384 kb on - strand, within H281DRAFT_01945at 64.563 kb on - strand, within H281DRAFT_01945at 64.563 kb on - strand, within H281DRAFT_01945at 64.872 kb on + strand, within H281DRAFT_01945at 65.039 kb on + strandat 65.040 kb on - strandat 65.152 kb on + strand, within H281DRAFT_01946at 65.153 kb on - strand, within H281DRAFT_01946at 65.238 kb on + strand, within H281DRAFT_01946at 65.238 kb on + strand, within H281DRAFT_01946at 65.263 kb on + strand, within H281DRAFT_01946at 65.263 kb on + strand, within H281DRAFT_01946at 65.264 kb on - strand, within H281DRAFT_01946at 65.264 kb on - strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.341 kb on + strand, within H281DRAFT_01946at 65.341 kb on + strand, within H281DRAFT_01946at 65.354 kb on + strand, within H281DRAFT_01946at 65.355 kb on - strandat 65.355 kb on - strand, within H281DRAFT_01946at 65.462 kb on + strand, within H281DRAFT_01946at 65.527 kb on - strand, within H281DRAFT_01946at 65.743 kb on + strandat 65.743 kb on + strandat 65.811 kb on + strandat 65.811 kb on + strandat 65.811 kb on + strandat 65.812 kb on - strandat 65.812 kb on - strandat 65.812 kb on - strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.920 kb on - strandat 65.920 kb on - strandat 65.920 kb on - strandat 65.959 kb on - strandat 65.986 kb on + strandat 65.986 kb on + strandat 65.986 kb on + strandat 65.987 kb on - strandat 65.987 kb on - strandat 66.121 kb on + strand, within H281DRAFT_01947at 66.121 kb on + strand, within H281DRAFT_01947at 66.122 kb on - strand, within H281DRAFT_01947at 66.140 kb on + strand, within H281DRAFT_01947at 66.140 kb on + strand, within H281DRAFT_01947at 66.140 kb on + strand, within H281DRAFT_01947at 66.141 kb on - strand, within H281DRAFT_01947at 66.212 kb on - strand, within H281DRAFT_01947at 66.234 kb on + strandat 66.234 kb on + strandat 66.235 kb on - strandat 66.235 kb on - strandat 66.318 kb on + strandat 66.371 kb on + strandat 66.371 kb on + strandat 66.371 kb on + strandat 66.371 kb on + strandat 66.371 kb on + strandat 66.372 kb on - strandat 66.421 kb on - strandat 66.508 kb on - strand, within H281DRAFT_01948at 66.508 kb on - strand, within H281DRAFT_01948at 66.554 kb on + strand, within H281DRAFT_01948at 66.580 kb on - strand, within H281DRAFT_01948at 66.580 kb on - strand, within H281DRAFT_01948at 66.580 kb on - strand, within H281DRAFT_01948at 66.580 kb on - strand, within H281DRAFT_01948at 66.580 kb on - strand, within H281DRAFT_01948at 66.627 kb on + strand, within H281DRAFT_01948at 66.711 kb on + strand, within H281DRAFT_01948at 66.720 kb on + strand, within H281DRAFT_01948

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
64,174 + H281DRAFT_01945 0.14 +0.1
64,221 + H281DRAFT_01945 0.18 -0.4
64,292 - H281DRAFT_01945 0.25 -1.8
64,292 - H281DRAFT_01945 0.25 -1.2
64,299 + H281DRAFT_01945 0.26 -0.4
64,299 + H281DRAFT_01945 0.26 +0.5
64,299 + H281DRAFT_01945 0.26 +0.6
64,384 - H281DRAFT_01945 0.34 -0.3
64,563 - H281DRAFT_01945 0.52 -1.6
64,563 - H281DRAFT_01945 0.52 -0.5
64,872 + H281DRAFT_01945 0.82 +0.6
65,039 + +0.7
65,040 - -1.4
65,152 + H281DRAFT_01946 0.15 -0.4
65,153 - H281DRAFT_01946 0.15 +0.1
65,238 + H281DRAFT_01946 0.28 -0.3
65,238 + H281DRAFT_01946 0.28 +0.6
65,263 + H281DRAFT_01946 0.31 -1.4
65,263 + H281DRAFT_01946 0.31 -0.1
65,264 - H281DRAFT_01946 0.31 +0.7
65,264 - H281DRAFT_01946 0.31 +0.7
65,320 + H281DRAFT_01946 0.40 -0.4
65,320 + H281DRAFT_01946 0.40 +0.3
65,320 + H281DRAFT_01946 0.40 -0.0
65,320 + H281DRAFT_01946 0.40 +0.4
65,341 + H281DRAFT_01946 0.43 -0.9
65,341 + H281DRAFT_01946 0.43 +0.6
65,354 + H281DRAFT_01946 0.45 -1.1
65,355 - -1.6
65,355 - H281DRAFT_01946 0.45 -0.3
65,462 + H281DRAFT_01946 0.61 -0.0
65,527 - H281DRAFT_01946 0.71 +0.1
65,743 + +0.4
65,743 + +0.5
65,811 + -0.5
65,811 + +0.5
65,811 + +0.7
65,812 - +0.4
65,812 - -0.3
65,812 - +0.8
65,919 + -2.2
65,919 + +0.6
65,919 + -2.2
65,920 - +0.3
65,920 - +0.2
65,920 - +0.7
65,959 - +0.2
65,986 + +1.1
65,986 + +1.0
65,986 + -0.6
65,987 - +0.3
65,987 - +0.4
66,121 + H281DRAFT_01947 0.55 +0.4
66,121 + H281DRAFT_01947 0.55 +0.4
66,122 - H281DRAFT_01947 0.55 -0.5
66,140 + H281DRAFT_01947 0.62 +1.1
66,140 + H281DRAFT_01947 0.62 +1.3
66,140 + H281DRAFT_01947 0.62 +1.1
66,141 - H281DRAFT_01947 0.63 +1.0
66,212 - H281DRAFT_01947 0.89 -0.2
66,234 + -2.7
66,234 + -0.3
66,235 - -0.1
66,235 - -0.4
66,318 + +2.4
66,371 + +0.2
66,371 + +0.2
66,371 + -0.4
66,371 + -0.4
66,371 + -0.1
66,372 - +1.4
66,421 - +0.2
66,508 - H281DRAFT_01948 0.14 +0.2
66,508 - H281DRAFT_01948 0.14 +0.2
66,554 + H281DRAFT_01948 0.17 -0.2
66,580 - H281DRAFT_01948 0.18 +0.2
66,580 - H281DRAFT_01948 0.18 -0.4
66,580 - H281DRAFT_01948 0.18 -1.7
66,580 - H281DRAFT_01948 0.18 +0.3
66,580 - H281DRAFT_01948 0.18 +0.2
66,627 + H281DRAFT_01948 0.21 -1.2
66,711 + H281DRAFT_01948 0.26 -0.2
66,720 + H281DRAFT_01948 0.26 +0.1

Or see this region's nucleotide sequence