Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01231

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01230 and H281DRAFT_01231 are separated by 260 nucleotidesH281DRAFT_01231 and H281DRAFT_01232 are separated by 170 nucleotides H281DRAFT_01230: H281DRAFT_01230 - 3-oxoacyl-[acyl-carrier protein] reductase, at 68,566 to 69,318 _01230 H281DRAFT_01231: H281DRAFT_01231 - hypothetical protein, at 69,579 to 69,923 _01231 H281DRAFT_01232: H281DRAFT_01232 - Predicted arabinose efflux permease, MFS family, at 70,094 to 71,356 _01232 Position (kb) 69 70Strain fitness (log2 ratio) -1 0 1 2 3at 68.705 kb on + strand, within H281DRAFT_01230at 68.705 kb on + strand, within H281DRAFT_01230at 68.818 kb on + strand, within H281DRAFT_01230at 68.975 kb on - strand, within H281DRAFT_01230at 69.362 kb on - strandat 69.395 kb on + strandat 69.397 kb on + strandat 69.397 kb on + strandat 69.398 kb on - strandat 69.666 kb on + strand, within H281DRAFT_01231at 69.841 kb on + strand, within H281DRAFT_01231at 69.842 kb on - strand, within H281DRAFT_01231at 69.968 kb on - strandat 70.013 kb on + strandat 70.015 kb on + strandat 70.019 kb on + strandat 70.096 kb on - strandat 70.367 kb on + strand, within H281DRAFT_01232at 70.626 kb on + strandat 70.627 kb on - strand, within H281DRAFT_01232

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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68,705 + H281DRAFT_01230 0.18 -0.2
68,705 + H281DRAFT_01230 0.18 -0.2
68,818 + H281DRAFT_01230 0.33 -1.3
68,975 - H281DRAFT_01230 0.54 -0.5
69,362 - +0.4
69,395 + +0.8
69,397 + -0.3
69,397 + +0.3
69,398 - -0.4
69,666 + H281DRAFT_01231 0.25 +0.6
69,841 + H281DRAFT_01231 0.76 +0.8
69,842 - H281DRAFT_01231 0.76 +0.7
69,968 - +0.4
70,013 + +0.6
70,015 + -0.1
70,019 + +0.4
70,096 - -1.1
70,367 + H281DRAFT_01232 0.22 +0.6
70,626 + +3.1
70,627 - H281DRAFT_01232 0.42 +0.7

Or see this region's nucleotide sequence