Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01210

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01209 and H281DRAFT_01210 are separated by 30 nucleotidesH281DRAFT_01210 and H281DRAFT_01211 are separated by 397 nucleotides H281DRAFT_01209: H281DRAFT_01209 - putative MFS transporter, AGZA family, xanthine/uracil permease, at 48,541 to 49,842 _01209 H281DRAFT_01210: H281DRAFT_01210 - Protein of unknown function (DUF1488), at 49,873 to 50,163 _01210 H281DRAFT_01211: H281DRAFT_01211 - Transcriptional regulator of acetoin/glycerol metabolism, at 50,561 to 52,537 _01211 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.939 kb on - strand, within H281DRAFT_01209at 49.005 kb on - strand, within H281DRAFT_01209at 49.050 kb on + strand, within H281DRAFT_01209at 49.096 kb on - strand, within H281DRAFT_01209at 49.105 kb on + strand, within H281DRAFT_01209at 49.109 kb on + strand, within H281DRAFT_01209at 49.110 kb on - strand, within H281DRAFT_01209at 49.110 kb on - strand, within H281DRAFT_01209at 49.257 kb on + strand, within H281DRAFT_01209at 49.274 kb on + strand, within H281DRAFT_01209at 49.274 kb on + strand, within H281DRAFT_01209at 49.451 kb on - strandat 49.594 kb on + strand, within H281DRAFT_01209at 49.697 kb on - strand, within H281DRAFT_01209at 49.735 kb on + strandat 49.735 kb on + strandat 49.735 kb on + strandat 49.826 kb on - strandat 49.826 kb on - strandat 49.826 kb on - strandat 49.829 kb on + strandat 49.830 kb on - strandat 49.830 kb on - strandat 49.896 kb on - strandat 49.907 kb on + strand, within H281DRAFT_01210at 50.129 kb on + strand, within H281DRAFT_01210at 50.130 kb on - strand, within H281DRAFT_01210at 50.261 kb on - strandat 50.261 kb on - strandat 50.470 kb on - strandat 50.470 kb on - strandat 50.531 kb on - strandat 50.726 kb on + strandat 50.728 kb on + strandat 50.989 kb on + strand, within H281DRAFT_01211

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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48,939 - H281DRAFT_01209 0.31 +0.2
49,005 - H281DRAFT_01209 0.36 -1.3
49,050 + H281DRAFT_01209 0.39 +0.4
49,096 - H281DRAFT_01209 0.43 +0.2
49,105 + H281DRAFT_01209 0.43 +0.5
49,109 + H281DRAFT_01209 0.44 +0.7
49,110 - H281DRAFT_01209 0.44 -1.0
49,110 - H281DRAFT_01209 0.44 +0.2
49,257 + H281DRAFT_01209 0.55 +0.4
49,274 + H281DRAFT_01209 0.56 -0.1
49,274 + H281DRAFT_01209 0.56 +0.5
49,451 - -1.3
49,594 + H281DRAFT_01209 0.81 +0.4
49,697 - H281DRAFT_01209 0.89 +0.9
49,735 + -3.5
49,735 + +0.0
49,735 + +0.1
49,826 - -0.4
49,826 - +0.5
49,826 - +0.4
49,829 + -0.9
49,830 - +0.1
49,830 - +0.3
49,896 - +0.7
49,907 + H281DRAFT_01210 0.12 +1.0
50,129 + H281DRAFT_01210 0.88 +1.3
50,130 - H281DRAFT_01210 0.88 -0.1
50,261 - -0.7
50,261 - -0.5
50,470 - +0.2
50,470 - +0.5
50,531 - -0.5
50,726 + +0.3
50,728 + -2.0
50,989 + H281DRAFT_01211 0.22 +1.2

Or see this region's nucleotide sequence