Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01065

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01064 and H281DRAFT_01065 are separated by 545 nucleotidesH281DRAFT_01065 and H281DRAFT_01066 are separated by 30 nucleotides H281DRAFT_01064: H281DRAFT_01064 - Tetratricopeptide (TPR) repeat, at 1,194,455 to 1,196,017 _01064 H281DRAFT_01065: H281DRAFT_01065 - NitT/TauT family transport system substrate-binding protein, at 1,196,563 to 1,197,543 _01065 H281DRAFT_01066: H281DRAFT_01066 - Phenylpropionate dioxygenase, large terminal subunit, at 1,197,574 to 1,198,611 _01066 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -1 0 1 2at 1195.569 kb on + strand, within H281DRAFT_01064at 1195.570 kb on - strand, within H281DRAFT_01064at 1195.612 kb on + strand, within H281DRAFT_01064at 1195.681 kb on - strand, within H281DRAFT_01064at 1195.753 kb on + strand, within H281DRAFT_01064at 1195.756 kb on + strand, within H281DRAFT_01064at 1195.757 kb on - strand, within H281DRAFT_01064at 1195.910 kb on - strandat 1196.073 kb on - strandat 1196.143 kb on + strandat 1196.144 kb on - strandat 1196.144 kb on - strandat 1196.324 kb on - strandat 1196.325 kb on + strandat 1196.326 kb on - strandat 1196.570 kb on + strandat 1196.719 kb on + strand, within H281DRAFT_01065at 1197.008 kb on - strand, within H281DRAFT_01065at 1197.039 kb on + strand, within H281DRAFT_01065at 1197.040 kb on - strand, within H281DRAFT_01065at 1197.490 kb on + strandat 1197.515 kb on - strandat 1197.515 kb on - strandat 1198.003 kb on + strand, within H281DRAFT_01066at 1198.466 kb on - strand, within H281DRAFT_01066

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,195,569 + H281DRAFT_01064 0.71 +0.7
1,195,570 - H281DRAFT_01064 0.71 -0.0
1,195,612 + H281DRAFT_01064 0.74 +0.4
1,195,681 - H281DRAFT_01064 0.78 +0.1
1,195,753 + H281DRAFT_01064 0.83 -0.6
1,195,756 + H281DRAFT_01064 0.83 -0.3
1,195,757 - H281DRAFT_01064 0.83 +0.4
1,195,910 - +1.2
1,196,073 - +0.3
1,196,143 + +0.2
1,196,144 - +0.6
1,196,144 - +0.1
1,196,324 - -0.4
1,196,325 + +0.0
1,196,326 - +0.0
1,196,570 + -1.1
1,196,719 + H281DRAFT_01065 0.16 +2.3
1,197,008 - H281DRAFT_01065 0.45 -0.1
1,197,039 + H281DRAFT_01065 0.49 +0.9
1,197,040 - H281DRAFT_01065 0.49 +0.9
1,197,490 + +1.1
1,197,515 - -0.7
1,197,515 - -0.3
1,198,003 + H281DRAFT_01066 0.41 -1.4
1,198,466 - H281DRAFT_01066 0.86 -1.2

Or see this region's nucleotide sequence