Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00654

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00653 and H281DRAFT_00654 are separated by 98 nucleotidesH281DRAFT_00654 and H281DRAFT_00655 are separated by 10 nucleotides H281DRAFT_00653: H281DRAFT_00653 - Enoyl-CoA hydratase/carnithine racemase, at 731,443 to 732,204 _00653 H281DRAFT_00654: H281DRAFT_00654 - putative spermidine/putrescine transport system substrate-binding protein, at 732,303 to 733,364 _00654 H281DRAFT_00655: H281DRAFT_00655 - putative spermidine/putrescine transport system ATP-binding protein, at 733,375 to 734,454 _00655 Position (kb) 732 733 734Strain fitness (log2 ratio) -1 0 1 2 3at 731.814 kb on + strand, within H281DRAFT_00653at 731.814 kb on + strand, within H281DRAFT_00653at 731.814 kb on + strand, within H281DRAFT_00653at 731.815 kb on - strand, within H281DRAFT_00653at 731.919 kb on + strand, within H281DRAFT_00653at 732.189 kb on + strandat 732.562 kb on - strand, within H281DRAFT_00654at 732.562 kb on - strand, within H281DRAFT_00654at 733.891 kb on - strand, within H281DRAFT_00655at 733.891 kb on - strand, within H281DRAFT_00655at 733.940 kb on + strand, within H281DRAFT_00655at 733.942 kb on + strand, within H281DRAFT_00655at 733.942 kb on + strand, within H281DRAFT_00655at 733.942 kb on + strand, within H281DRAFT_00655at 733.942 kb on + strand, within H281DRAFT_00655at 734.322 kb on + strand, within H281DRAFT_00655

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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731,814 + H281DRAFT_00653 0.49 +0.2
731,814 + H281DRAFT_00653 0.49 -0.6
731,814 + H281DRAFT_00653 0.49 +0.1
731,815 - H281DRAFT_00653 0.49 -0.3
731,919 + H281DRAFT_00653 0.62 +0.3
732,189 + -0.7
732,562 - H281DRAFT_00654 0.24 +0.6
732,562 - H281DRAFT_00654 0.24 +0.8
733,891 - H281DRAFT_00655 0.48 +0.2
733,891 - H281DRAFT_00655 0.48 -1.4
733,940 + H281DRAFT_00655 0.52 +1.0
733,942 + H281DRAFT_00655 0.53 +3.0
733,942 + H281DRAFT_00655 0.53 -0.4
733,942 + H281DRAFT_00655 0.53 +3.0
733,942 + H281DRAFT_00655 0.53 +0.8
734,322 + H281DRAFT_00655 0.88 -0.4

Or see this region's nucleotide sequence