Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00333

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00332 and H281DRAFT_00333 are separated by 138 nucleotidesH281DRAFT_00333 and H281DRAFT_00334 are separated by 172 nucleotides H281DRAFT_00332: H281DRAFT_00332 - methyl-accepting chemotaxis protein, at 363,927 to 365,624 _00332 H281DRAFT_00333: H281DRAFT_00333 - L-ascorbate metabolism protein UlaG, beta-lactamase superfamily, at 365,763 to 366,542 _00333 H281DRAFT_00334: H281DRAFT_00334 - transcriptional regulator, LysR family, at 366,715 to 367,599 _00334 Position (kb) 365 366 367Strain fitness (log2 ratio) -1 0 1at 365.280 kb on - strand, within H281DRAFT_00332at 365.732 kb on + strandat 365.733 kb on - strandat 366.071 kb on - strand, within H281DRAFT_00333at 366.352 kb on - strand, within H281DRAFT_00333at 366.361 kb on - strand, within H281DRAFT_00333at 366.440 kb on - strand, within H281DRAFT_00333at 366.611 kb on + strandat 366.895 kb on + strand, within H281DRAFT_00334at 366.945 kb on + strand, within H281DRAFT_00334at 367.219 kb on - strand, within H281DRAFT_00334at 367.252 kb on + strand, within H281DRAFT_00334at 367.252 kb on + strand, within H281DRAFT_00334at 367.413 kb on - strand, within H281DRAFT_00334

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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365,280 - H281DRAFT_00332 0.80 -1.0
365,732 + -0.3
365,733 - +0.4
366,071 - H281DRAFT_00333 0.39 +1.3
366,352 - H281DRAFT_00333 0.76 +0.7
366,361 - H281DRAFT_00333 0.77 +0.5
366,440 - H281DRAFT_00333 0.87 -0.2
366,611 + +0.2
366,895 + H281DRAFT_00334 0.20 -0.2
366,945 + H281DRAFT_00334 0.26 -0.9
367,219 - H281DRAFT_00334 0.57 -0.9
367,252 + H281DRAFT_00334 0.61 -0.8
367,252 + H281DRAFT_00334 0.61 -0.7
367,413 - H281DRAFT_00334 0.79 +0.4

Or see this region's nucleotide sequence