Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1284

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1283 and Ga0059261_1284 are separated by 49 nucleotidesGa0059261_1284 and Ga0059261_1285 are separated by 70 nucleotidesGa0059261_1285 and Ga0059261_1286 are separated by 155 nucleotides Ga0059261_1283: Ga0059261_1283 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 1,343,488 to 1,345,221 _1283 Ga0059261_1284: Ga0059261_1284 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,345,271 to 1,346,554 _1284 Ga0059261_1285: Ga0059261_1285 - Uncharacterized conserved protein, at 1,346,625 to 1,346,954 _1285 Ga0059261_1286: Ga0059261_1286 - phasin family protein, at 1,347,110 to 1,347,814 _1286 Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1344.273 kb on + strandat 1344.344 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.354 kb on + strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.355 kb on - strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.356 kb on + strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.357 kb on - strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.602 kb on + strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.603 kb on - strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.667 kb on + strand, within Ga0059261_1283at 1344.668 kb on - strand, within Ga0059261_1283at 1344.668 kb on - strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.734 kb on + strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.735 kb on - strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.740 kb on + strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.741 kb on - strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.967 kb on + strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1344.968 kb on - strand, within Ga0059261_1283at 1345.016 kb on + strand, within Ga0059261_1283at 1345.017 kb on - strand, within Ga0059261_1283at 1345.272 kb on + strandat 1345.273 kb on - strandat 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.835 kb on - strand, within Ga0059261_1285at 1346.836 kb on + strand, within Ga0059261_1285at 1346.836 kb on + strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1347.001 kb on + strandat 1347.249 kb on + strandat 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,344,273 + -0.8
1,344,344 + Ga0059261_1283 0.49 -0.2
1,344,354 + Ga0059261_1283 0.50 -0.9
1,344,354 + Ga0059261_1283 0.50 -1.2
1,344,354 + Ga0059261_1283 0.50 +0.5
1,344,354 + Ga0059261_1283 0.50 +0.4
1,344,355 - Ga0059261_1283 0.50 -0.2
1,344,355 - Ga0059261_1283 0.50 -0.1
1,344,355 - Ga0059261_1283 0.50 +3.0
1,344,355 - Ga0059261_1283 0.50 +1.1
1,344,355 - Ga0059261_1283 0.50 -0.3
1,344,355 - Ga0059261_1283 0.50 +0.6
1,344,355 - Ga0059261_1283 0.50 -0.5
1,344,356 + Ga0059261_1283 0.50 +0.5
1,344,356 + Ga0059261_1283 0.50 -0.1
1,344,356 + Ga0059261_1283 0.50 -0.8
1,344,356 + Ga0059261_1283 0.50 +0.0
1,344,356 + Ga0059261_1283 0.50 -1.3
1,344,356 + Ga0059261_1283 0.50 +0.3
1,344,356 + Ga0059261_1283 0.50 -0.5
1,344,357 - Ga0059261_1283 0.50 -0.2
1,344,357 - Ga0059261_1283 0.50 -0.9
1,344,357 - Ga0059261_1283 0.50 +0.3
1,344,357 - Ga0059261_1283 0.50 +0.7
1,344,357 - Ga0059261_1283 0.50 -0.5
1,344,357 - Ga0059261_1283 0.50 +0.4
1,344,357 - Ga0059261_1283 0.50 +0.4
1,344,357 - Ga0059261_1283 0.50 -0.4
1,344,602 + Ga0059261_1283 0.64 +0.5
1,344,602 + Ga0059261_1283 0.64 +0.5
1,344,602 + Ga0059261_1283 0.64 -0.5
1,344,602 + Ga0059261_1283 0.64 -2.5
1,344,602 + Ga0059261_1283 0.64 +0.4
1,344,602 + Ga0059261_1283 0.64 +0.9
1,344,602 + Ga0059261_1283 0.64 -0.1
1,344,603 - Ga0059261_1283 0.64 +0.3
1,344,603 - Ga0059261_1283 0.64 -0.6
1,344,603 - Ga0059261_1283 0.64 -0.8
1,344,603 - Ga0059261_1283 0.64 +0.4
1,344,603 - Ga0059261_1283 0.64 +0.0
1,344,603 - Ga0059261_1283 0.64 +1.4
1,344,603 - Ga0059261_1283 0.64 +0.0
1,344,603 - Ga0059261_1283 0.64 +0.4
1,344,603 - Ga0059261_1283 0.64 -0.4
1,344,603 - Ga0059261_1283 0.64 -0.4
1,344,667 + Ga0059261_1283 0.68 -0.2
1,344,667 + Ga0059261_1283 0.68 -0.2
1,344,667 + Ga0059261_1283 0.68 -0.8
1,344,667 + Ga0059261_1283 0.68 +0.9
1,344,667 + Ga0059261_1283 0.68 +0.5
1,344,668 - Ga0059261_1283 0.68 +0.9
1,344,668 - Ga0059261_1283 0.68 -1.5
1,344,734 + Ga0059261_1283 0.72 +0.1
1,344,734 + Ga0059261_1283 0.72 +0.3
1,344,734 + Ga0059261_1283 0.72 +0.8
1,344,735 - Ga0059261_1283 0.72 +1.0
1,344,735 - Ga0059261_1283 0.72 -0.8
1,344,735 - Ga0059261_1283 0.72 +0.2
1,344,740 + Ga0059261_1283 0.72 -1.8
1,344,740 + Ga0059261_1283 0.72 -0.3
1,344,740 + Ga0059261_1283 0.72 -1.7
1,344,740 + Ga0059261_1283 0.72 -0.3
1,344,741 - Ga0059261_1283 0.72 +0.3
1,344,741 - Ga0059261_1283 0.72 -0.2
1,344,741 - Ga0059261_1283 0.72 +2.0
1,344,967 + Ga0059261_1283 0.85 +0.0
1,344,967 + Ga0059261_1283 0.85 +1.2
1,344,967 + Ga0059261_1283 0.85 +0.6
1,344,967 + Ga0059261_1283 0.85 -0.5
1,344,967 + Ga0059261_1283 0.85 -0.1
1,344,967 + Ga0059261_1283 0.85 -0.3
1,344,967 + Ga0059261_1283 0.85 +0.1
1,344,967 + Ga0059261_1283 0.85 -0.2
1,344,968 - Ga0059261_1283 0.85 +0.3
1,344,968 - Ga0059261_1283 0.85 +0.3
1,344,968 - Ga0059261_1283 0.85 +0.4
1,344,968 - Ga0059261_1283 0.85 +0.7
1,345,016 + Ga0059261_1283 0.88 +0.4
1,345,017 - Ga0059261_1283 0.88 +0.6
1,345,272 + -0.6
1,345,273 - -0.1
1,346,713 + Ga0059261_1285 0.27 -0.9
1,346,713 + Ga0059261_1285 0.27 -0.2
1,346,713 + Ga0059261_1285 0.27 -0.8
1,346,713 + Ga0059261_1285 0.27 -1.3
1,346,713 + Ga0059261_1285 0.27 -0.9
1,346,713 + Ga0059261_1285 0.27 -0.1
1,346,713 + Ga0059261_1285 0.27 -1.2
1,346,714 - Ga0059261_1285 0.27 +1.7
1,346,714 - Ga0059261_1285 0.27 -1.0
1,346,714 - Ga0059261_1285 0.27 -0.3
1,346,714 - Ga0059261_1285 0.27 +1.4
1,346,714 - Ga0059261_1285 0.27 -0.8
1,346,834 + Ga0059261_1285 0.63 -0.9
1,346,834 + Ga0059261_1285 0.63 -0.3
1,346,834 + Ga0059261_1285 0.63 -0.5
1,346,834 + Ga0059261_1285 0.63 +0.4
1,346,834 + Ga0059261_1285 0.63 +0.4
1,346,835 - Ga0059261_1285 0.64 -0.7
1,346,836 + Ga0059261_1285 0.64 -1.1
1,346,836 + Ga0059261_1285 0.64 -0.5
1,346,837 - Ga0059261_1285 0.64 -0.2
1,346,837 - Ga0059261_1285 0.64 -1.3
1,346,837 - Ga0059261_1285 0.64 +0.7
1,346,837 - Ga0059261_1285 0.64 -0.9
1,346,837 - Ga0059261_1285 0.64 -0.7
1,346,837 - Ga0059261_1285 0.64 -0.3
1,346,997 - -0.1
1,346,997 - -0.6
1,346,997 - -0.8
1,346,997 - -0.2
1,346,997 - -0.5
1,347,001 + -2.5
1,347,249 + -1.0
1,347,250 - Ga0059261_1286 0.20 -3.0
1,347,250 - Ga0059261_1286 0.20 -1.9
1,347,250 - Ga0059261_1286 0.20 -0.8
1,347,250 - Ga0059261_1286 0.20 -0.3
1,347,250 - Ga0059261_1286 0.20 -3.0
1,347,250 - Ga0059261_1286 0.20 -1.3
1,347,250 - Ga0059261_1286 0.20 -3.0
1,347,250 - Ga0059261_1286 0.20 -1.5
1,347,343 - Ga0059261_1286 0.33 -2.0
1,347,343 - Ga0059261_1286 0.33 -2.7

Or see this region's nucleotide sequence