Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03087

Experiment: PYE 4C survival rep3 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep3 58 days
3,235,363	+		CCNA_03085	0.84	-3.0
3,235,371	-		CCNA_03085	0.85	+3.8
3,235,371	-		CCNA_03085	0.85	-2.4
3,235,371	-		CCNA_03085	0.85	-0.1
3,235,374	+		CCNA_03085	0.86	-0.1
3,235,374	+		CCNA_03085	0.86	+3.2
3,235,382	-		CCNA_03085	0.86	+0.2
3,235,386	+		CCNA_03085	0.87	-0.9
3,235,399	+		CCNA_03085	0.88	-1.1
3,235,417	+				-2.4
3,235,417	+				-0.9
3,235,425	-				+2.0
3,235,425	-				+0.3
3,235,477	+				-1.5
3,235,495	-				-0.7
3,235,495	-				+0.2
3,235,500	-				+1.5
3,235,596	-				-0.4
3,235,637	+		CCNA_03086	0.13	-0.8
3,235,649	+		CCNA_03086	0.16	+0.4
3,235,649	+		CCNA_03086	0.16	-0.8
3,235,654	+		CCNA_03086	0.17	+0.7
3,235,656	-		CCNA_03086	0.17	-0.3
3,235,657	-		CCNA_03086	0.18	-0.3
3,235,669	+		CCNA_03086	0.20	-0.5
3,235,669	+		CCNA_03086	0.20	-1.5
3,235,669	+		CCNA_03086	0.20	-1.2
3,235,677	-		CCNA_03086	0.22	-0.4
3,235,683	+		CCNA_03086	0.23	+1.2
3,235,691	-		CCNA_03086	0.25	-0.3
3,235,706	+		CCNA_03086	0.29	-1.6
3,235,726	+		CCNA_03086	0.33	-1.1
3,235,819	+		CCNA_03086	0.54	+1.2
3,235,865	+		CCNA_03086	0.64	+0.5
3,235,865	+		CCNA_03086	0.64	-1.8
3,235,865	+		CCNA_03086	0.64	-0.9
3,235,865	+		CCNA_03086	0.64	-0.8
3,235,876	+		CCNA_03086	0.67	-0.3
3,235,876	+		CCNA_03086	0.67	-0.1
3,235,921	+		CCNA_03086	0.77	-0.3
3,235,978	-		CCNA_03086	0.89	+0.2
3,236,055	-				-1.3
3,236,092	+				-0.9
3,236,100	-				+1.2
3,236,100	-				+0.4
3,236,121	-				-2.2
3,236,190	+				-0.4
3,236,320	+				-0.6
3,236,322	+				+1.7
3,236,341	+				-0.5
3,236,352	+				+0.8
3,236,360	+				+4.6
3,236,361	+				-1.2
3,236,362	+				-0.4
3,236,398	-				+2.2
3,236,407	-				+0.7
3,236,491	+		CCNA_03087	0.24	-0.8
3,236,499	-		CCNA_03087	0.26	-1.7
3,236,509	-				-1.8
3,236,509	-		CCNA_03087	0.27	-0.9
3,236,523	-		CCNA_03087	0.30	+0.8
3,236,544	+		CCNA_03087	0.34	-2.2
3,236,562	-		CCNA_03087	0.37	-0.6
3,236,588	+		CCNA_03087	0.42	-0.1
3,236,596	-		CCNA_03087	0.43	-1.3
3,236,596	-		CCNA_03087	0.43	-1.6
3,236,601	-		CCNA_03087	0.44	-3.3
3,236,637	-		CCNA_03087	0.50	-0.1
3,236,637	-		CCNA_03087	0.50	+0.2
3,236,675	+		CCNA_03087	0.57	+1.2
3,236,677	-		CCNA_03087	0.57	-1.8
3,236,677	-		CCNA_03087	0.57	+1.1
3,236,699	-		CCNA_03087	0.61	-2.4
3,236,700	+		CCNA_03087	0.61	+1.1
3,236,709	-		CCNA_03087	0.63	-0.2
3,236,709	-		CCNA_03087	0.63	-4.6
3,236,722	+		CCNA_03087	0.65	-1.6
3,236,736	+		CCNA_03087	0.68	-0.1
3,236,741	+		CCNA_03087	0.69	-1.3
3,236,741	+		CCNA_03087	0.69	-0.9
3,236,741	+		CCNA_03087	0.69	-1.8
3,236,744	-		CCNA_03087	0.69	-2.3
3,236,749	+		CCNA_03087	0.70	+0.1
3,236,749	-		CCNA_03087	0.70	-1.4
3,236,757	-		CCNA_03087	0.72	-2.1
3,236,782	+		CCNA_03087	0.76	-0.3
3,236,783	-		CCNA_03087	0.76	+1.2
3,236,783	-		CCNA_03087	0.76	+0.4
3,236,788	-		CCNA_03087	0.77	-0.8
3,236,805	-		CCNA_03087	0.80	-0.1
3,236,815	-		CCNA_03087	0.82	-0.5
3,236,824	+		CCNA_03087	0.84	-0.2
3,236,824	+		CCNA_03087	0.84	+0.2
3,236,824	+		CCNA_03087	0.84	-1.6
3,236,824	+		CCNA_03087	0.84	-2.6
3,236,832	-		CCNA_03087	0.85	+0.5
3,236,832	-		CCNA_03087	0.85	-0.9
3,236,868	+				+2.9
3,236,897	-				-2.6
3,236,928	+				-1.2
3,236,953	+				-2.7
3,237,007	-				-1.0
3,237,015	-				-1.1
3,237,033	-				-0.9
3,237,049	+				-0.7
3,237,078	+				-1.1
3,237,126	+		CCNA_03088	0.12	-0.4
3,237,132	-		CCNA_03088	0.12	+0.1
3,237,136	+		CCNA_03088	0.12	-0.2
3,237,144	-		CCNA_03088	0.13	-0.4
3,237,183	-		CCNA_03088	0.15	-1.6
3,237,192	+		CCNA_03088	0.15	-0.6
3,237,192	+		CCNA_03088	0.15	+1.4
3,237,200	-		CCNA_03088	0.16	+0.1
3,237,201	+		CCNA_03088	0.16	+0.2
3,237,228	-		CCNA_03088	0.17	+1.9
3,237,252	-		CCNA_03088	0.18	-0.4
3,237,315	+		CCNA_03088	0.22	+0.2
3,237,333	+		CCNA_03088	0.23	-1.9
3,237,399	-		CCNA_03088	0.26	+1.1
3,237,422	+		CCNA_03088	0.27	-0.7
3,237,424	-		CCNA_03088	0.28	-0.1
3,237,550	+		CCNA_03088	0.34	+0.5
3,237,550	+		CCNA_03088	0.34	-0.4
3,237,550	+		CCNA_03088	0.34	+0.0
3,237,550	+		CCNA_03088	0.34	+1.4
3,237,550	+		CCNA_03088	0.34	+0.7
3,237,550	+		CCNA_03088	0.34	-0.3
3,237,550	+		CCNA_03088	0.34	-0.4
3,237,550	+		CCNA_03088	0.34	+0.7
3,237,550	+		CCNA_03088	0.34	-1.1
3,237,550	+		CCNA_03088	0.34	-0.9
3,237,550	+		CCNA_03088	0.34	+0.8
3,237,558	-		CCNA_03088	0.35	-2.7
3,237,558	-		CCNA_03088	0.35	+1.1
3,237,558	-		CCNA_03088	0.35	+0.5
3,237,558	-		CCNA_03088	0.35	-2.1
3,237,558	-		CCNA_03088	0.35	+0.8
3,237,558	-		CCNA_03088	0.35	+0.2
3,237,563	+		CCNA_03088	0.35	-0.6
3,237,573	+		CCNA_03088	0.35	+0.0
3,237,573	+		CCNA_03088	0.35	+0.4
3,237,573	+		CCNA_03088	0.35	+1.2
3,237,573	+		CCNA_03088	0.35	+1.7
3,237,573	+		CCNA_03088	0.35	+0.4
3,237,573	+		CCNA_03088	0.35	-0.2
3,237,573	+		CCNA_03088	0.35	-0.8
3,237,573	+		CCNA_03088	0.35	+0.6
3,237,573	+		CCNA_03088	0.35	-1.2
3,237,573	+		CCNA_03088	0.35	+0.5
3,237,578	+		CCNA_03088	0.36	-1.2
3,237,581	-		CCNA_03088	0.36	+0.4
3,237,581	-		CCNA_03088	0.36	-0.1
3,237,581	-		CCNA_03088	0.36	-1.1
3,237,651	+		CCNA_03088	0.40	-1.3
3,237,659	-		CCNA_03088	0.40	+1.9
3,237,659	-		CCNA_03088	0.40	+0.8
3,237,705	-		CCNA_03088	0.43	-1.1
3,237,712	-		CCNA_03088	0.43	+0.7
3,237,720	+		CCNA_03088	0.43	-1.6
3,237,728	-		CCNA_03088	0.44	-0.2
3,237,728	-		CCNA_03088	0.44	-1.3
3,237,751	-		CCNA_03088	0.45	-0.2
3,237,768	+		CCNA_03088	0.46	-1.8
3,237,776	-		CCNA_03088	0.46	+1.8
3,237,784	-		CCNA_03088	0.47	+2.2
3,237,805	+				-1.0
3,237,820	+		CCNA_03088	0.49	+1.8
3,237,820	+		CCNA_03088	0.49	-3.5
3,237,828	-		CCNA_03088	0.49	-0.8
3,237,828	-		CCNA_03088	0.49	+0.3
3,237,856	-		CCNA_03088	0.51	-1.5
3,237,879	-		CCNA_03088	0.52	+4.2