Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03072

Experiment: PYE 4C survival rep3 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep3 58 days
3,221,875	-		CCNA_03071	0.29	-1.1
3,221,875	-		CCNA_03071	0.29	-2.4
3,221,924	+		CCNA_03071	0.33	-0.1
3,221,929	+		CCNA_03071	0.33	+0.4
3,221,932	-		CCNA_03071	0.33	+0.2
3,221,944	+		CCNA_03071	0.34	+0.4
3,221,944	+		CCNA_03071	0.34	-1.1
3,221,944	+		CCNA_03071	0.34	+0.0
3,221,944	+		CCNA_03071	0.34	+0.9
3,221,944	+		CCNA_03071	0.34	-1.1
3,221,944	+		CCNA_03071	0.34	-1.6
3,221,951	-		CCNA_03071	0.35	+0.8
3,221,952	-		CCNA_03071	0.35	+3.1
3,221,952	-		CCNA_03071	0.35	-1.7
3,221,952	-		CCNA_03071	0.35	-0.4
3,221,952	-		CCNA_03071	0.35	-0.2
3,221,952	-		CCNA_03071	0.35	-1.8
3,221,952	-		CCNA_03071	0.35	-2.9
3,221,958	+		CCNA_03071	0.36	-1.5
3,221,958	+		CCNA_03071	0.36	-0.2
3,221,959	+		CCNA_03071	0.36	-1.4
3,221,966	-		CCNA_03071	0.36	+1.7
3,221,967	-		CCNA_03071	0.36	+0.9
3,221,967	-		CCNA_03071	0.36	-0.5
3,222,006	+		CCNA_03071	0.39	+0.6
3,222,006	+		CCNA_03071	0.39	-1.3
3,222,019	+		CCNA_03071	0.40	-1.0
3,222,019	-		CCNA_03071	0.40	-1.3
3,222,027	-		CCNA_03071	0.41	-1.6
3,222,093	-		CCNA_03071	0.46	+1.2
3,222,094	+		CCNA_03071	0.46	+0.1
3,222,094	+		CCNA_03071	0.46	+0.9
3,222,094	+		CCNA_03071	0.46	+0.4
3,222,100	-		CCNA_03071	0.47	-1.1
3,222,102	-		CCNA_03071	0.47	+2.0
3,222,102	-		CCNA_03071	0.47	-2.6
3,222,102	-		CCNA_03071	0.47	-0.1
3,222,110	-		CCNA_03071	0.47	+2.3
3,222,127	-		CCNA_03071	0.49	-1.1
3,222,147	+		CCNA_03071	0.50	-2.5
3,222,153	+		CCNA_03071	0.51	-2.5
3,222,153	+		CCNA_03071	0.51	-1.6
3,222,153	+		CCNA_03071	0.51	+0.2
3,222,153	+		CCNA_03071	0.51	+0.7
3,222,158	+		CCNA_03071	0.51	+0.1
3,222,161	-		CCNA_03071	0.51	+0.7
3,222,161	-		CCNA_03071	0.51	+0.7
3,222,161	-		CCNA_03071	0.51	+1.3
3,222,198	+		CCNA_03071	0.54	-2.4
3,222,216	+		CCNA_03071	0.56	-1.3
3,222,216	+		CCNA_03071	0.56	+0.1
3,222,224	-		CCNA_03071	0.56	+2.3
3,222,228	+		CCNA_03071	0.57	+0.7
3,222,266	-		CCNA_03071	0.60	-1.0
3,222,297	+		CCNA_03071	0.62	-1.1
3,222,319	+		CCNA_03071	0.64	-2.6
3,222,327	+		CCNA_03071	0.64	+1.3
3,222,327	-		CCNA_03071	0.64	-2.1
3,222,335	-		CCNA_03071	0.65	-0.1
3,222,340	-		CCNA_03071	0.65	+0.7
3,222,350	+		CCNA_03071	0.66	+0.1
3,222,358	-		CCNA_03071	0.67	+2.3
3,222,367	+		CCNA_03071	0.68	+1.2
3,222,380	+		CCNA_03071	0.69	-0.1
3,222,393	-		CCNA_03071	0.70	+0.9
3,222,410	-		CCNA_03071	0.71	+1.5
3,222,418	-		CCNA_03071	0.72	+2.6
3,222,433	+		CCNA_03071	0.73	-2.3
3,222,441	-		CCNA_03071	0.73	-0.3
3,222,441	-		CCNA_03071	0.73	-0.7
3,222,448	+		CCNA_03071	0.74	+1.5
3,222,471	+		CCNA_03071	0.76	+0.7
3,222,472	-		CCNA_03071	0.76	-1.9
3,222,479	-		CCNA_03071	0.76	-0.9
3,222,480	-		CCNA_03071	0.76	-1.8
3,222,485	-		CCNA_03071	0.77	-0.5
3,222,485	-		CCNA_03071	0.77	-1.3
3,222,485	-		CCNA_03071	0.77	+0.7
3,222,487	+		CCNA_03071	0.77	+0.4
3,222,521	-		CCNA_03071	0.80	-0.1
3,222,521	-		CCNA_03071	0.80	-1.3
3,222,521	-		CCNA_03071	0.80	-2.7
3,222,521	-		CCNA_03071	0.80	+0.7
3,222,523	+		CCNA_03071	0.80	-0.7
3,222,603	+		CCNA_03071	0.86	+2.3
3,222,603	+		CCNA_03071	0.86	-0.3
3,222,603	+		CCNA_03071	0.86	+0.5
3,222,603	+		CCNA_03071	0.86	-1.6
3,222,611	-		CCNA_03071	0.87	-2.1
3,222,611	-		CCNA_03071	0.87	-0.7
3,222,611	-		CCNA_03071	0.87	-1.7
3,222,611	-		CCNA_03071	0.87	-1.9
3,222,627	+		CCNA_03071	0.88	-2.1
3,222,629	-		CCNA_03071	0.88	-0.5
3,222,658	+				-1.1
3,222,677	-				+1.9
3,222,694	-				-2.5
3,222,710	-				-2.7
3,222,715	+				+2.6
3,222,721	+				+2.3
3,222,752	+				-1.9
3,222,759	+				-2.0
3,222,770	+				-0.6
3,222,778	-				-2.8
3,222,778	-				+0.9
3,222,782	+				-0.6
3,222,805	-				-2.7
3,222,813	+				-2.1
3,222,864	-				-0.9
3,222,871	+				-2.4
3,222,876	+				-1.7
3,222,876	+				-3.4
3,222,886	+				+1.3
3,222,945	+		CCNA_03072	0.12	-1.6
3,223,070	-		CCNA_03072	0.30	+1.3
3,223,139	+		CCNA_03072	0.40	-1.3
3,223,139	+		CCNA_03072	0.40	-3.1
3,223,146	+		CCNA_03072	0.41	-0.7
3,223,162	+		CCNA_03072	0.43	+0.3
3,223,222	+		CCNA_03072	0.51	-1.4
3,223,267	-		CCNA_03072	0.58	+2.3
3,223,388	+		CCNA_03072	0.75	-2.1
3,223,406	-		CCNA_03072	0.77	+2.3
3,223,414	+		CCNA_03072	0.79	-2.1
3,223,422	+		CCNA_03072	0.80	-3.4
3,223,422	+		CCNA_03072	0.80	-0.7
3,223,488	+		CCNA_03072	0.89	-1.3
3,223,508	+				+0.3
3,223,515	-				-1.4
3,223,537	+				-1.2
3,223,578	+				+2.0
3,223,578	+				-0.7
3,223,578	+				-1.9
3,223,578	+				-2.7
3,223,578	+				-1.2
3,223,578	+				+0.4
3,223,586	-				-0.1
3,223,639	+				-3.7
3,223,647	-				-1.0
3,223,668	-				+2.3
3,223,668	-				-2.3
3,223,675	+				-0.3
3,223,690	-				-2.7
3,223,729	+		CCNA_03073	0.17	-1.8
3,223,734	+		CCNA_03073	0.18	-1.9
3,223,734	+		CCNA_03073	0.18	+0.3
3,223,734	+		CCNA_03073	0.18	-2.7
3,223,737	-		CCNA_03073	0.18	-0.9
3,223,741	+		CCNA_03073	0.19	+0.8
3,223,742	-		CCNA_03073	0.19	+0.3
3,223,742	-		CCNA_03073	0.19	-2.0
3,223,742	-		CCNA_03073	0.19	-2.1
3,223,742	-		CCNA_03073	0.19	-2.2
3,223,742	-		CCNA_03073	0.19	-1.8
3,223,742	-		CCNA_03073	0.19	-0.1
3,223,742	-		CCNA_03073	0.19	-1.1
3,223,791	+		CCNA_03073	0.28	-1.4
3,223,794	-		CCNA_03073	0.29	+0.2
3,223,840	+		CCNA_03073	0.38	-2.2
3,223,850	+		CCNA_03073	0.40	-0.2
3,223,875	+		CCNA_03073	0.44	-1.4
3,223,893	-		CCNA_03073	0.48	+0.4
3,223,924	-		CCNA_03073	0.54	-1.2
3,223,932	+		CCNA_03073	0.55	-2.1
3,223,941	-		CCNA_03073	0.57	-1.8
3,223,977	-		CCNA_03073	0.64	+1.3
3,224,001	+		CCNA_03073	0.68	-2.0
3,224,009	-		CCNA_03073	0.70	-1.7
3,224,029	-		CCNA_03073	0.74	-2.6
3,224,055	+		CCNA_03073	0.79	-0.1
3,224,071	+		CCNA_03073	0.82	-1.6
3,224,074	+		CCNA_03073	0.82	-1.6
3,224,113	+		CCNA_03073	0.90	-1.1
3,224,121	-				+0.4
3,224,126	-				-0.5
3,224,131	+				-0.1
3,224,131	+				-1.7
3,224,146	+				+0.3
3,224,154	-				-1.1
3,224,163	-				-0.4
3,224,200	+				+1.3
3,224,283	-		CCNA_03074	0.16	+1.4
3,224,293	+		CCNA_03074	0.18	-2.3
3,224,301	-		CCNA_03074	0.19	-1.4
3,224,325	-		CCNA_03074	0.22	-2.2
3,224,341	+		CCNA_03074	0.24	+0.9
3,224,349	-		CCNA_03074	0.25	-2.1
3,224,362	+		CCNA_03074	0.27	-0.1
3,224,368	-		CCNA_03074	0.28	-0.9
3,224,415	-		CCNA_03074	0.34	+1.1
3,224,415	-		CCNA_03074	0.34	-1.7
3,224,438	-		CCNA_03074	0.38	+3.0
3,224,447	-		CCNA_03074	0.39	-1.6
3,224,494	-		CCNA_03074	0.45	-2.0
3,224,514	-		CCNA_03074	0.48	-2.5
3,224,543	+		CCNA_03074	0.52	+1.3
3,224,543	+		CCNA_03074	0.52	-2.1
3,224,543	+		CCNA_03074	0.52	-0.3
3,224,543	+		CCNA_03074	0.52	-0.9
3,224,543	+		CCNA_03074	0.52	-0.9
3,224,543	+		CCNA_03074	0.52	+0.3
3,224,543	+		CCNA_03074	0.52	-1.0
3,224,551	-				-0.1
3,224,551	-		CCNA_03074	0.53	-0.5
3,224,551	-		CCNA_03074	0.53	-1.6