Experiment: PYE 4C survival rep3 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01809 and CCNA_01810 are separated by 3 nucleotides CCNA_01810 and CCNA_01811 overlap by 4 nucleotides CCNA_01811 and CCNA_01812 are separated by 38 nucleotides
CCNA_01809: CCNA_01809 - lipoic acid synthetase, at 1,934,502 to 1,935,479
_01809
CCNA_01810: CCNA_01810 - coenzyme Q-binding protein, at 1,935,483 to 1,935,929
_01810
CCNA_01811: CCNA_01811 - competence/damage-inducible protein CinA, at 1,935,926 to 1,936,417
_01811
CCNA_01812: CCNA_01812 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,936,456 to 1,937,604
_01812
Position (kb)
1935
1936
1937 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1935.445 kb on - strand at 1935.445 kb on - strand at 1935.474 kb on + strand at 1935.474 kb on + strand at 1935.474 kb on + strand at 1935.474 kb on + strand at 1935.482 kb on - strand at 1935.488 kb on - strand at 1935.930 kb on - strand at 1935.953 kb on - strand at 1935.992 kb on + strand, within CCNA_01811 at 1936.070 kb on - strand, within CCNA_01811 at 1936.141 kb on + strand, within CCNA_01811 at 1936.276 kb on + strand, within CCNA_01811 at 1936.284 kb on - strand, within CCNA_01811 at 1936.309 kb on - strand, within CCNA_01811 at 1936.312 kb on + strand, within CCNA_01811 at 1936.356 kb on - strand, within CCNA_01811 at 1936.379 kb on - strand at 1936.445 kb on + strand at 1936.453 kb on - strand at 1936.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days remove 1,935,445 - -0.4 1,935,445 - +2.6 1,935,474 + +1.2 1,935,474 + +0.8 1,935,474 + +1.7 1,935,474 + +1.1 1,935,482 - -1.6 1,935,488 - +0.7 1,935,930 - -0.8 1,935,953 - -2.7 1,935,992 + CCNA_01811 0.13 -2.3 1,936,070 - CCNA_01811 0.29 -4.1 1,936,141 + CCNA_01811 0.44 -2.1 1,936,276 + CCNA_01811 0.71 -2.9 1,936,284 - CCNA_01811 0.73 -1.6 1,936,309 - CCNA_01811 0.78 -2.9 1,936,312 + CCNA_01811 0.78 -1.6 1,936,356 - CCNA_01811 0.87 -1.9 1,936,379 - -2.7 1,936,445 + +0.6 1,936,453 - +0.1 1,936,453 - +0.6
Or see this region's nucleotide sequence