Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01123

Experiment: PYE 4C survival rep3 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep3 58 days
1,226,749	+		CCNA_01122	0.40	+0.2
1,226,749	+		CCNA_01122	0.40	+1.5
1,226,772	-		CCNA_01122	0.41	-0.2
1,226,836	-		CCNA_01122	0.45	-0.2
1,226,836	-		CCNA_01122	0.45	-3.1
1,226,864	+		CCNA_01122	0.47	+0.5
1,226,900	+		CCNA_01122	0.49	+0.7
1,226,900	+		CCNA_01122	0.49	-0.1
1,226,910	+		CCNA_01122	0.50	-0.5
1,226,910	+		CCNA_01122	0.50	-2.9
1,226,910	+		CCNA_01122	0.50	+0.6
1,226,974	-		CCNA_01122	0.54	-0.4
1,227,006	-		CCNA_01122	0.56	+2.4
1,227,027	+		CCNA_01122	0.58	+0.9
1,227,057	-		CCNA_01122	0.60	-2.4
1,227,118	+		CCNA_01122	0.64	+2.3
1,227,121	-		CCNA_01122	0.64	-0.4
1,227,126	-		CCNA_01122	0.64	-1.4
1,227,126	-		CCNA_01122	0.64	-1.6
1,227,140	+		CCNA_01122	0.65	+0.0
1,227,187	+		CCNA_01122	0.68	-1.1
1,227,188	+		CCNA_01122	0.68	+0.5
1,227,196	-		CCNA_01122	0.69	-1.8
1,227,197	+		CCNA_01122	0.69	+0.6
1,227,197	+		CCNA_01122	0.69	+0.2
1,227,216	+		CCNA_01122	0.70	-1.6
1,227,240	-		CCNA_01122	0.72	-1.3
1,227,240	-		CCNA_01122	0.72	-0.9
1,227,240	-		CCNA_01122	0.72	-1.1
1,227,259	+		CCNA_01122	0.73	-0.7
1,227,259	+		CCNA_01122	0.73	+0.1
1,227,259	+		CCNA_01122	0.73	-0.7
1,227,269	+		CCNA_01122	0.73	-1.3
1,227,269	+		CCNA_01122	0.73	-3.2
1,227,274	+		CCNA_01122	0.74	+0.4
1,227,274	+		CCNA_01122	0.74	+0.3
1,227,277	-		CCNA_01122	0.74	-1.5
1,227,277	-		CCNA_01122	0.74	+0.1
1,227,277	-		CCNA_01122	0.74	-1.5
1,227,279	+		CCNA_01122	0.74	+0.4
1,227,282	-		CCNA_01122	0.74	-0.2
1,227,287	-		CCNA_01122	0.75	+2.4
1,227,314	-		CCNA_01122	0.76	+0.4
1,227,314	-		CCNA_01122	0.76	-0.1
1,227,363	-		CCNA_01122	0.80	-0.8
1,227,371	+		CCNA_01122	0.80	-2.2
1,227,383	+		CCNA_01122	0.81	+1.2
1,227,383	+		CCNA_01122	0.81	+1.3
1,227,386	-		CCNA_01122	0.81	+0.2
1,227,391	-		CCNA_01122	0.81	-1.1
1,227,391	-		CCNA_01122	0.81	+0.8
1,227,391	-		CCNA_01122	0.81	-0.8
1,227,402	+		CCNA_01122	0.82	+0.9
1,227,439	+		CCNA_01122	0.85	+0.5
1,227,439	+		CCNA_01122	0.85	-0.8
1,227,439	+		CCNA_01122	0.85	+0.6
1,227,447	-		CCNA_01122	0.85	+2.4
1,227,451	+		CCNA_01122	0.85	+0.6
1,227,459	-		CCNA_01122	0.86	-1.1
1,227,459	-		CCNA_01122	0.86	+0.8
1,227,469	-		CCNA_01122	0.86	-1.3
1,227,469	-		CCNA_01122	0.86	+0.1
1,227,491	+		CCNA_01122	0.88	-0.3
1,227,498	+		CCNA_01122	0.88	+2.2
1,227,498	+		CCNA_01122	0.88	-0.3
1,227,498	+		CCNA_01122	0.88	+1.8
1,227,498	+		CCNA_01122	0.88	-0.3
1,227,498	+		CCNA_01122	0.88	+0.1
1,227,506	-		CCNA_01122	0.89	+0.8
1,227,506	-		CCNA_01122	0.89	-0.4
1,227,506	-		CCNA_01122	0.89	-2.0
1,227,506	-		CCNA_01122	0.89	-1.3
1,227,506	-		CCNA_01122	0.89	-1.7
1,227,548	+				-0.7
1,227,548	+				-0.1
1,227,558	-				+0.1
1,227,570	+				-0.7
1,227,570	+				+0.8
1,227,578	-				-1.6
1,227,581	+				-0.5
1,227,581	+				-1.7
1,227,588	-				+1.1
1,227,589	-				-0.4
1,227,599	-				-1.3
1,227,608	-				-0.8
1,227,622	+				-0.6
1,227,650	+				-0.0
1,227,727	+				-0.8
1,227,727	+				-0.9
1,227,746	+				-2.3
1,227,895	+		CCNA_01123	0.13	-1.9
1,227,898	-		CCNA_01123	0.13	-2.5
1,227,913	-		CCNA_01123	0.14	-2.5
1,227,939	+		CCNA_01123	0.16	-0.8
1,227,996	-		CCNA_01123	0.19	-3.1
1,228,025	-		CCNA_01123	0.21	+0.1
1,228,051	+		CCNA_01123	0.23	-4.3
1,228,051	+		CCNA_01123	0.23	-1.6
1,228,051	+		CCNA_01123	0.23	-1.1
1,228,051	+		CCNA_01123	0.23	-0.8
1,228,059	-		CCNA_01123	0.23	-1.3
1,228,061	+		CCNA_01123	0.23	-0.7
1,228,106	-		CCNA_01123	0.26	-1.8
1,228,134	-		CCNA_01123	0.28	-0.2
1,228,185	+		CCNA_01123	0.31	-0.2
1,228,185	+		CCNA_01123	0.31	-2.5
1,228,185	+		CCNA_01123	0.31	-0.9
1,228,185	+		CCNA_01123	0.31	+1.0
1,228,185	+		CCNA_01123	0.31	-0.9
1,228,185	+		CCNA_01123	0.31	-2.1
1,228,190	+		CCNA_01123	0.31	-1.4
1,228,193	-		CCNA_01123	0.32	-1.1
1,228,198	-		CCNA_01123	0.32	-0.4
1,228,217	+		CCNA_01123	0.33	+0.6
1,228,300	+		CCNA_01123	0.38	+0.6
1,228,301	+		CCNA_01123	0.38	-1.0
1,228,303	-		CCNA_01123	0.38	+1.4
1,228,308	+		CCNA_01123	0.39	-2.2
1,228,309	-		CCNA_01123	0.39	-1.3
1,228,321	+		CCNA_01123	0.40	-3.7
1,228,348	-		CCNA_01123	0.41	+0.8
1,228,396	-		CCNA_01123	0.44	-0.4
1,228,416	+		CCNA_01123	0.45	-1.3
1,228,434	+		CCNA_01123	0.47	-1.6
1,228,464	+		CCNA_01123	0.48	+0.6
1,228,464	+		CCNA_01123	0.48	-0.4
1,228,472	-		CCNA_01123	0.49	-2.8
1,228,472	-		CCNA_01123	0.49	+0.8
1,228,485	+		CCNA_01123	0.50	-1.2
1,228,523	+		CCNA_01123	0.52	+0.8
1,228,586	+		CCNA_01123	0.56	-2.3
1,228,616	-		CCNA_01123	0.58	-0.2
1,228,640	+		CCNA_01123	0.59	-3.0
1,228,651	+		CCNA_01123	0.60	-1.1
1,228,664	-		CCNA_01123	0.61	-1.6
1,228,669	-		CCNA_01123	0.61	-2.4
1,228,691	+		CCNA_01123	0.63	-3.1
1,228,698	+		CCNA_01123	0.63	-2.8
1,228,698	+		CCNA_01123	0.63	+1.4
1,228,698	+		CCNA_01123	0.63	-0.0
1,228,698	+		CCNA_01123	0.63	+2.4
1,228,706	-		CCNA_01123	0.63	+0.8
1,228,706	-		CCNA_01123	0.63	-1.2
1,228,715	+		CCNA_01123	0.64	-2.6
1,228,716	+		CCNA_01123	0.64	-2.4
1,228,723	-		CCNA_01123	0.65	-1.1
1,228,756	+		CCNA_01123	0.67	-2.7
1,228,808	+		CCNA_01123	0.70	-0.4
1,228,834	+		CCNA_01123	0.71	-1.3
1,228,838	+		CCNA_01123	0.72	-1.8
1,228,871	+		CCNA_01123	0.74	-1.2
1,228,879	-		CCNA_01123	0.74	-3.1
1,228,940	-		CCNA_01123	0.78	-0.7
1,228,942	-		CCNA_01123	0.78	-3.1
1,228,967	-		CCNA_01123	0.80	-1.3
1,228,980	-		CCNA_01123	0.81	-3.6
1,229,060	+		CCNA_01123	0.86	-2.2
1,229,060	+		CCNA_01123	0.86	-3.2
1,229,098	+		CCNA_01123	0.88	-1.2
1,229,107	-		CCNA_01123	0.88	+1.4
1,229,142	+				+0.6
1,229,170	-				-2.6
1,229,178	+				-0.9
1,229,259	-				-2.9
1,229,321	+				+0.5
1,229,321	+				-0.3
1,229,329	-				-2.0
1,229,336	-				+0.7
1,229,348	+				+0.9
1,229,375	-				+2.4
1,229,406	+				-2.2
1,229,416	+				-0.5
1,229,428	+				+0.5
1,229,436	-				-2.3
1,229,489	-		CCNA_01124	0.14	-1.7
1,229,514	-		CCNA_01124	0.17	-0.3
1,229,540	+		CCNA_01124	0.19	+0.7
1,229,555	+		CCNA_01124	0.21	+2.3
1,229,580	+		CCNA_01124	0.23	+0.1
1,229,588	-		CCNA_01124	0.24	-2.5
1,229,622	-		CCNA_01124	0.27	+2.7
1,229,666	+		CCNA_01124	0.31	+1.4
1,229,678	+		CCNA_01124	0.32	-1.8
1,229,686	-		CCNA_01124	0.33	-1.3
1,229,747	+		CCNA_01124	0.39	-2.0
1,229,758	+		CCNA_01124	0.40	-3.1
1,229,766	-		CCNA_01124	0.41	-1.1
1,229,766	-		CCNA_01124	0.41	+0.5
1,229,773	-		CCNA_01124	0.41	-1.2
1,229,775	+		CCNA_01124	0.42	+1.7
1,229,816	-		CCNA_01124	0.46	-2.5
1,229,817	-		CCNA_01124	0.46	-0.9
1,229,864	+		CCNA_01124	0.50	-1.1
1,229,872	-		CCNA_01124	0.51	-0.6
1,229,872	-		CCNA_01124	0.51	-0.5
1,229,872	-		CCNA_01124	0.51	-1.9
1,229,891	+		CCNA_01124	0.53	-0.1
1,229,899	-		CCNA_01124	0.54	-0.2
1,229,899	-		CCNA_01124	0.54	+0.4
1,229,899	-		CCNA_01124	0.54	-1.3
1,229,915	+		CCNA_01124	0.55	+0.4
1,229,927	-		CCNA_01124	0.56	-1.8
1,230,045	-		CCNA_01124	0.68	-0.2
1,230,064	+		CCNA_01124	0.69	-2.3
1,230,088	+		CCNA_01124	0.72	+0.6
1,230,096	-		CCNA_01124	0.72	-0.9
1,230,102	+		CCNA_01124	0.73	-0.2
1,230,102	+		CCNA_01124	0.73	-0.4
1,230,102	+		CCNA_01124	0.73	+0.8
1,230,106	-		CCNA_01124	0.73	-0.8
1,230,119	+		CCNA_01124	0.75	-0.4
1,230,145	-		CCNA_01124	0.77	+0.8
1,230,161	-		CCNA_01124	0.79	+2.4
1,230,168	+		CCNA_01124	0.79	-2.1
1,230,174	+		CCNA_01124	0.80	-0.8
1,230,174	+		CCNA_01124	0.80	+1.9
1,230,174	+		CCNA_01124	0.80	-2.8
1,230,177	-		CCNA_01124	0.80	+0.1
1,230,182	-		CCNA_01124	0.81	+4.0
1,230,182	-		CCNA_01124	0.81	-2.5
1,230,182	-		CCNA_01124	0.81	+0.1
1,230,182	-		CCNA_01124	0.81	+2.4
1,230,184	+		CCNA_01124	0.81	-1.4
1,230,184	-		CCNA_01124	0.81	-1.6
1,230,220	+		CCNA_01124	0.84	-1.0
1,230,251	-		CCNA_01124	0.87	+2.4