Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00867

Experiment: PYE 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00866 and CCNA_00867 are separated by 186 nucleotidesCCNA_00867 and CCNA_03889 are separated by 254 nucleotidesCCNA_03889 and CCNA_00869 are separated by 157 nucleotides CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) (from data), at 944,663 to 945,817 _00866 CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492 _00867 CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268 _03889 CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383 _00869 Position (kb) 946 947Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 945.086 kb on - strand, within CCNA_00866at 945.089 kb on - strand, within CCNA_00866at 945.101 kb on + strand, within CCNA_00866at 945.109 kb on - strand, within CCNA_00866at 945.136 kb on + strand, within CCNA_00866at 945.144 kb on - strand, within CCNA_00866at 945.149 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.172 kb on + strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.191 kb on + strand, within CCNA_00866at 945.237 kb on + strand, within CCNA_00866at 945.269 kb on - strand, within CCNA_00866at 945.271 kb on + strand, within CCNA_00866at 945.273 kb on + strand, within CCNA_00866at 945.318 kb on + strand, within CCNA_00866at 945.324 kb on - strand, within CCNA_00866at 945.404 kb on - strand, within CCNA_00866at 945.481 kb on - strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.495 kb on - strand, within CCNA_00866at 945.517 kb on - strand, within CCNA_00866at 945.543 kb on + strand, within CCNA_00866at 945.548 kb on + strand, within CCNA_00866at 945.555 kb on + strand, within CCNA_00866at 945.565 kb on + strand, within CCNA_00866at 945.573 kb on + strand, within CCNA_00866at 945.578 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.584 kb on + strand, within CCNA_00866at 945.585 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strandat 945.663 kb on - strand, within CCNA_00866at 945.668 kb on + strand, within CCNA_00866at 945.681 kb on - strand, within CCNA_00866at 945.682 kb on + strand, within CCNA_00866at 945.705 kb on + strandat 945.745 kb on - strandat 945.762 kb on + strandat 945.770 kb on - strandat 945.781 kb on - strandat 945.781 kb on - strandat 945.868 kb on - strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.924 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 946.011 kb on + strandat 946.065 kb on + strand, within CCNA_00867at 946.065 kb on - strand, within CCNA_00867at 946.065 kb on - strand, within CCNA_00867at 946.132 kb on + strand, within CCNA_00867at 946.135 kb on - strand, within CCNA_00867at 946.143 kb on + strand, within CCNA_00867at 946.143 kb on + strand, within CCNA_00867at 946.146 kb on + strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.161 kb on + strand, within CCNA_00867at 946.168 kb on - strand, within CCNA_00867at 946.190 kb on + strand, within CCNA_00867at 946.190 kb on + strand, within CCNA_00867at 946.198 kb on - strand, within CCNA_00867at 946.198 kb on - strand, within CCNA_00867at 946.237 kb on + strand, within CCNA_00867at 946.237 kb on + strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.246 kb on - strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.332 kb on - strand, within CCNA_00867at 946.334 kb on + strand, within CCNA_00867at 946.340 kb on + strand, within CCNA_00867at 946.376 kb on + strand, within CCNA_00867at 946.381 kb on + strand, within CCNA_00867at 946.389 kb on - strand, within CCNA_00867at 946.405 kb on + strand, within CCNA_00867at 946.405 kb on + strand, within CCNA_00867at 946.413 kb on - strand, within CCNA_00867at 946.457 kb on + strandat 946.464 kb on + strandat 946.494 kb on - strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.517 kb on - strandat 946.553 kb on - strandat 946.589 kb on + strandat 946.609 kb on - strandat 946.655 kb on + strandat 946.656 kb on + strandat 946.656 kb on + strandat 946.658 kb on - strandat 946.664 kb on - strandat 946.685 kb on + strandat 946.711 kb on - strandat 946.727 kb on - strandat 946.741 kb on + strandat 946.767 kb on - strandat 946.809 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.823 kb on - strand, within CCNA_03889at 946.827 kb on + strand, within CCNA_03889at 946.827 kb on + strand, within CCNA_03889at 946.876 kb on + strand, within CCNA_03889at 946.917 kb on + strand, within CCNA_03889at 946.917 kb on + strand, within CCNA_03889at 946.917 kb on + strand, within CCNA_03889at 946.925 kb on - strand, within CCNA_03889at 946.925 kb on - strand, within CCNA_03889at 946.925 kb on - strand, within CCNA_03889at 946.944 kb on + strand, within CCNA_03889at 946.962 kb on + strand, within CCNA_03889at 946.963 kb on + strand, within CCNA_03889at 946.963 kb on + strand, within CCNA_03889at 946.963 kb on + strand, within CCNA_03889at 946.970 kb on - strand, within CCNA_03889at 946.978 kb on + strand, within CCNA_03889at 946.981 kb on + strand, within CCNA_03889at 946.986 kb on - strand, within CCNA_03889at 946.996 kb on + strand, within CCNA_03889at 946.998 kb on - strand, within CCNA_03889at 947.004 kb on - strand, within CCNA_03889at 947.010 kb on + strand, within CCNA_03889at 947.031 kb on + strand, within CCNA_03889at 947.062 kb on - strand, within CCNA_03889at 947.088 kb on + strand, within CCNA_03889at 947.107 kb on + strand, within CCNA_03889at 947.109 kb on - strand, within CCNA_03889at 947.115 kb on - strand, within CCNA_03889at 947.203 kb on + strand, within CCNA_03889at 947.211 kb on - strand, within CCNA_03889at 947.231 kb on + strandat 947.237 kb on + strandat 947.247 kb on + strandat 947.262 kb on + strandat 947.262 kb on + strandat 947.262 kb on + strandat 947.262 kb on + strandat 947.262 kb on + strandat 947.262 kb on + strandat 947.269 kb on + strandat 947.269 kb on + strandat 947.271 kb on + strandat 947.274 kb on + strandat 947.282 kb on - strandat 947.306 kb on + strandat 947.356 kb on + strandat 947.358 kb on - strandat 947.364 kb on - strandat 947.391 kb on + strandat 947.418 kb on + strandat 947.418 kb on + strandat 947.442 kb on + strandat 947.452 kb on + strandat 947.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days
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945,086 - CCNA_00866 0.37 -0.6
945,089 - CCNA_00866 0.37 -0.6
945,101 + CCNA_00866 0.38 +0.4
945,109 - CCNA_00866 0.39 -1.3
945,136 + CCNA_00866 0.41 -1.1
945,144 - CCNA_00866 0.42 +3.4
945,149 + CCNA_00866 0.42 -0.4
945,167 + CCNA_00866 0.44 +1.4
945,167 + CCNA_00866 0.44 -1.9
945,167 + CCNA_00866 0.44 -0.1
945,172 + CCNA_00866 0.44 +0.4
945,175 - CCNA_00866 0.44 -1.1
945,175 - CCNA_00866 0.44 -0.4
945,175 - CCNA_00866 0.44 -1.4
945,175 - CCNA_00866 0.44 +0.4
945,191 + CCNA_00866 0.46 +2.4
945,237 + CCNA_00866 0.50 -2.8
945,269 - CCNA_00866 0.52 +0.8
945,271 + CCNA_00866 0.53 +0.8
945,273 + CCNA_00866 0.53 -0.4
945,318 + CCNA_00866 0.57 +1.1
945,324 - CCNA_00866 0.57 +0.8
945,404 - CCNA_00866 0.64 -3.0
945,481 - CCNA_00866 0.71 +0.1
945,494 + CCNA_00866 0.72 -0.6
945,494 + CCNA_00866 0.72 -2.3
945,494 + CCNA_00866 0.72 -0.3
945,495 - CCNA_00866 0.72 +1.9
945,517 - CCNA_00866 0.74 +1.4
945,543 + CCNA_00866 0.76 +0.4
945,548 + CCNA_00866 0.77 -1.0
945,555 + CCNA_00866 0.77 +3.4
945,565 + CCNA_00866 0.78 +2.1
945,573 + CCNA_00866 0.79 +0.5
945,578 - CCNA_00866 0.79 -0.6
945,583 - CCNA_00866 0.80 -0.3
945,583 - CCNA_00866 0.80 +1.4
945,584 + CCNA_00866 0.80 -0.6
945,585 + CCNA_00866 0.80 +0.4
945,621 + CCNA_00866 0.83 -1.1
945,621 + CCNA_00866 0.83 +0.6
945,621 + CCNA_00866 0.83 +2.4
945,621 + CCNA_00866 0.83 -1.9
945,621 + CCNA_00866 0.83 -2.2
945,629 - CCNA_00866 0.84 -0.9
945,629 - CCNA_00866 0.84 -0.9
945,629 - CCNA_00866 0.84 -0.4
945,629 - CCNA_00866 0.84 -1.1
945,629 - -0.1
945,663 - CCNA_00866 0.87 +1.1
945,668 + CCNA_00866 0.87 -0.8
945,681 - CCNA_00866 0.88 +0.2
945,682 + CCNA_00866 0.88 -1.1
945,705 + -1.1
945,745 - +0.1
945,762 + +0.4
945,770 - -3.3
945,781 - -2.1
945,781 - +1.6
945,868 - +0.4
945,921 + -2.2
945,921 + -0.3
945,921 + +0.8
945,921 + -1.4
945,921 + -1.6
945,921 + -2.7
945,921 + +1.1
945,921 + -1.2
945,921 + -3.0
945,921 + +0.4
945,921 + +2.0
945,921 + +0.4
945,924 - +1.0
945,929 - +3.7
945,929 - -2.3
945,929 - -1.4
945,929 - +3.9
945,929 - -3.0
945,929 - +0.0
945,929 - -0.2
945,929 - +1.0
946,011 + +0.8
946,065 + CCNA_00867 0.12 +0.1
946,065 - CCNA_00867 0.12 -0.8
946,065 - CCNA_00867 0.12 +2.1
946,132 + CCNA_00867 0.26 +1.9
946,135 - CCNA_00867 0.27 -0.4
946,143 + CCNA_00867 0.28 +0.9
946,143 + CCNA_00867 0.28 -2.5
946,146 + CCNA_00867 0.29 +0.7
946,151 - CCNA_00867 0.30 -1.0
946,151 - CCNA_00867 0.30 +0.6
946,151 - CCNA_00867 0.30 -2.4
946,151 - CCNA_00867 0.30 +2.4
946,161 + CCNA_00867 0.32 +1.4
946,168 - CCNA_00867 0.34 -1.3
946,190 + CCNA_00867 0.38 +0.0
946,190 + CCNA_00867 0.38 -1.4
946,198 - CCNA_00867 0.40 -1.2
946,198 - CCNA_00867 0.40 +2.4
946,237 + CCNA_00867 0.48 +1.2
946,237 + CCNA_00867 0.48 -0.1
946,245 - CCNA_00867 0.49 -2.0
946,245 - CCNA_00867 0.49 +2.4
946,245 - CCNA_00867 0.49 +0.5
946,245 - CCNA_00867 0.49 -1.9
946,245 - CCNA_00867 0.49 -0.1
946,246 - CCNA_00867 0.49 -0.6
946,304 + CCNA_00867 0.61 +1.3
946,304 + CCNA_00867 0.61 -3.8
946,304 + CCNA_00867 0.61 -0.0
946,312 - CCNA_00867 0.63 -0.0
946,312 - CCNA_00867 0.63 -0.2
946,312 - CCNA_00867 0.63 +0.7
946,312 - CCNA_00867 0.63 +1.0
946,312 - CCNA_00867 0.63 +0.9
946,324 + CCNA_00867 0.65 -0.5
946,324 + CCNA_00867 0.65 -1.6
946,324 + CCNA_00867 0.65 +0.2
946,324 + CCNA_00867 0.65 +0.5
946,332 - CCNA_00867 0.67 -0.6
946,334 + CCNA_00867 0.67 +0.3
946,340 + CCNA_00867 0.69 +1.4
946,376 + CCNA_00867 0.76 +0.9
946,381 + CCNA_00867 0.77 +0.6
946,389 - CCNA_00867 0.79 -0.1
946,405 + CCNA_00867 0.82 -0.2
946,405 + CCNA_00867 0.82 +1.6
946,413 - CCNA_00867 0.84 +1.1
946,457 + +0.3
946,464 + +2.8
946,494 - +1.2
946,509 + +0.0
946,509 + +1.0
946,509 + +1.1
946,509 + +1.8
946,509 + +0.8
946,509 + +0.6
946,509 + +0.8
946,509 + +1.2
946,517 - -0.4
946,553 - +0.3
946,589 + -2.3
946,609 - +1.0
946,655 + -0.3
946,656 + +0.6
946,656 + +1.9
946,658 - +0.6
946,664 - -0.8
946,685 + +0.8
946,711 - +0.3
946,727 - +0.4
946,741 + +1.0
946,767 - -1.4
946,809 + CCNA_03889 0.12 +0.1
946,815 + CCNA_03889 0.13 -0.4
946,815 + CCNA_03889 0.13 +0.8
946,815 + CCNA_03889 0.13 +0.9
946,815 + CCNA_03889 0.13 -0.9
946,815 + CCNA_03889 0.13 +0.7
946,823 - CCNA_03889 0.15 +0.6
946,827 + CCNA_03889 0.15 -1.7
946,827 + CCNA_03889 0.15 +1.4
946,876 + CCNA_03889 0.25 +0.5
946,917 + CCNA_03889 0.33 +1.4
946,917 + CCNA_03889 0.33 +0.2
946,917 + CCNA_03889 0.33 -1.2
946,925 - CCNA_03889 0.34 +1.6
946,925 - CCNA_03889 0.34 -0.9
946,925 - CCNA_03889 0.34 +0.3
946,944 + CCNA_03889 0.38 +0.1
946,962 + CCNA_03889 0.41 +0.6
946,963 + CCNA_03889 0.41 +0.8
946,963 + CCNA_03889 0.41 -1.3
946,963 + CCNA_03889 0.41 -2.5
946,970 - CCNA_03889 0.43 -0.8
946,978 + CCNA_03889 0.44 -0.1
946,981 + CCNA_03889 0.45 +1.3
946,986 - CCNA_03889 0.46 -1.1
946,996 + CCNA_03889 0.48 +0.8
946,998 - CCNA_03889 0.48 +0.8
947,004 - CCNA_03889 0.49 -0.5
947,010 + CCNA_03889 0.50 +0.3
947,031 + CCNA_03889 0.54 +0.4
947,062 - CCNA_03889 0.60 -1.9
947,088 + CCNA_03889 0.65 +0.5
947,107 + CCNA_03889 0.69 -0.3
947,109 - CCNA_03889 0.69 -0.1
947,115 - CCNA_03889 0.70 -1.0
947,203 + CCNA_03889 0.87 -0.2
947,211 - CCNA_03889 0.89 +0.4
947,231 + -0.5
947,237 + -1.0
947,247 + +2.0
947,262 + +1.2
947,262 + -0.6
947,262 + +0.1
947,262 + +1.9
947,262 + +0.0
947,262 + +1.0
947,269 + +1.4
947,269 + +1.2
947,271 + +0.2
947,274 + +0.6
947,282 - -0.5
947,306 + +1.4
947,356 + +0.3
947,358 - +0.5
947,364 - +0.3
947,391 + +0.7
947,418 + -1.5
947,418 + +0.2
947,442 + -1.5
947,452 + -2.2
947,485 - +0.5

Or see this region's nucleotide sequence