Experiment: PYE 4C survival rep3 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides CCNA_03889 and CCNA_00869 are separated by 157 nucleotides
CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) <small>(from data)</small>, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
Position (kb) 946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 945.086 kb on - strand, within CCNA_00866 at 945.089 kb on - strand, within CCNA_00866 at 945.101 kb on + strand, within CCNA_00866 at 945.109 kb on - strand, within CCNA_00866 at 945.136 kb on + strand, within CCNA_00866 at 945.144 kb on - strand, within CCNA_00866 at 945.149 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.172 kb on + strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.191 kb on + strand, within CCNA_00866 at 945.237 kb on + strand, within CCNA_00866 at 945.269 kb on - strand, within CCNA_00866 at 945.271 kb on + strand, within CCNA_00866 at 945.273 kb on + strand, within CCNA_00866 at 945.318 kb on + strand, within CCNA_00866 at 945.324 kb on - strand, within CCNA_00866 at 945.404 kb on - strand, within CCNA_00866 at 945.481 kb on - strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.495 kb on - strand, within CCNA_00866 at 945.517 kb on - strand, within CCNA_00866 at 945.543 kb on + strand, within CCNA_00866 at 945.548 kb on + strand, within CCNA_00866 at 945.555 kb on + strand, within CCNA_00866 at 945.565 kb on + strand, within CCNA_00866 at 945.573 kb on + strand, within CCNA_00866 at 945.578 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.584 kb on + strand, within CCNA_00866 at 945.585 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand at 945.663 kb on - strand, within CCNA_00866 at 945.668 kb on + strand, within CCNA_00866 at 945.681 kb on - strand, within CCNA_00866 at 945.682 kb on + strand, within CCNA_00866 at 945.705 kb on + strand at 945.745 kb on - strand at 945.762 kb on + strand at 945.770 kb on - strand at 945.781 kb on - strand at 945.781 kb on - strand at 945.868 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.924 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 946.011 kb on + strand at 946.065 kb on + strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.132 kb on + strand, within CCNA_00867 at 946.135 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.146 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.161 kb on + strand, within CCNA_00867 at 946.168 kb on - strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.246 kb on - strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.332 kb on - strand, within CCNA_00867 at 946.334 kb on + strand, within CCNA_00867 at 946.340 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.389 kb on - strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.457 kb on + strand at 946.464 kb on + strand at 946.494 kb on - strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.517 kb on - strand at 946.553 kb on - strand at 946.589 kb on + strand at 946.609 kb on - strand at 946.655 kb on + strand at 946.656 kb on + strand at 946.656 kb on + strand at 946.658 kb on - strand at 946.664 kb on - strand at 946.685 kb on + strand at 946.711 kb on - strand at 946.727 kb on - strand at 946.741 kb on + strand at 946.767 kb on - strand at 946.809 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.823 kb on - strand, within CCNA_03889 at 946.827 kb on + strand, within CCNA_03889 at 946.827 kb on + strand, within CCNA_03889 at 946.876 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.944 kb on + strand, within CCNA_03889 at 946.962 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.970 kb on - strand, within CCNA_03889 at 946.978 kb on + strand, within CCNA_03889 at 946.981 kb on + strand, within CCNA_03889 at 946.986 kb on - strand, within CCNA_03889 at 946.996 kb on + strand, within CCNA_03889 at 946.998 kb on - strand, within CCNA_03889 at 947.004 kb on - strand, within CCNA_03889 at 947.010 kb on + strand, within CCNA_03889 at 947.031 kb on + strand, within CCNA_03889 at 947.062 kb on - strand, within CCNA_03889 at 947.088 kb on + strand, within CCNA_03889 at 947.107 kb on + strand, within CCNA_03889 at 947.109 kb on - strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.203 kb on + strand, within CCNA_03889 at 947.211 kb on - strand, within CCNA_03889 at 947.231 kb on + strand at 947.237 kb on + strand at 947.247 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.269 kb on + strand at 947.269 kb on + strand at 947.271 kb on + strand at 947.274 kb on + strand at 947.282 kb on - strand at 947.306 kb on + strand at 947.356 kb on + strand at 947.358 kb on - strand at 947.364 kb on - strand at 947.391 kb on + strand at 947.418 kb on + strand at 947.418 kb on + strand at 947.442 kb on + strand at 947.452 kb on + strand at 947.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days remove 945,086 - CCNA_00866 0.37 -0.6 945,089 - CCNA_00866 0.37 -0.6 945,101 + CCNA_00866 0.38 +0.4 945,109 - CCNA_00866 0.39 -1.3 945,136 + CCNA_00866 0.41 -1.1 945,144 - CCNA_00866 0.42 +3.4 945,149 + CCNA_00866 0.42 -0.4 945,167 + CCNA_00866 0.44 +1.4 945,167 + CCNA_00866 0.44 -1.9 945,167 + CCNA_00866 0.44 -0.1 945,172 + CCNA_00866 0.44 +0.4 945,175 - CCNA_00866 0.44 -1.1 945,175 - CCNA_00866 0.44 -0.4 945,175 - CCNA_00866 0.44 -1.4 945,175 - CCNA_00866 0.44 +0.4 945,191 + CCNA_00866 0.46 +2.4 945,237 + CCNA_00866 0.50 -2.8 945,269 - CCNA_00866 0.52 +0.8 945,271 + CCNA_00866 0.53 +0.8 945,273 + CCNA_00866 0.53 -0.4 945,318 + CCNA_00866 0.57 +1.1 945,324 - CCNA_00866 0.57 +0.8 945,404 - CCNA_00866 0.64 -3.0 945,481 - CCNA_00866 0.71 +0.1 945,494 + CCNA_00866 0.72 -0.6 945,494 + CCNA_00866 0.72 -2.3 945,494 + CCNA_00866 0.72 -0.3 945,495 - CCNA_00866 0.72 +1.9 945,517 - CCNA_00866 0.74 +1.4 945,543 + CCNA_00866 0.76 +0.4 945,548 + CCNA_00866 0.77 -1.0 945,555 + CCNA_00866 0.77 +3.4 945,565 + CCNA_00866 0.78 +2.1 945,573 + CCNA_00866 0.79 +0.5 945,578 - CCNA_00866 0.79 -0.6 945,583 - CCNA_00866 0.80 -0.3 945,583 - CCNA_00866 0.80 +1.4 945,584 + CCNA_00866 0.80 -0.6 945,585 + CCNA_00866 0.80 +0.4 945,621 + CCNA_00866 0.83 -1.1 945,621 + CCNA_00866 0.83 +0.6 945,621 + CCNA_00866 0.83 +2.4 945,621 + CCNA_00866 0.83 -1.9 945,621 + CCNA_00866 0.83 -2.2 945,629 - CCNA_00866 0.84 -0.9 945,629 - CCNA_00866 0.84 -0.9 945,629 - CCNA_00866 0.84 -0.4 945,629 - CCNA_00866 0.84 -1.1 945,629 - -0.1 945,663 - CCNA_00866 0.87 +1.1 945,668 + CCNA_00866 0.87 -0.8 945,681 - CCNA_00866 0.88 +0.2 945,682 + CCNA_00866 0.88 -1.1 945,705 + -1.1 945,745 - +0.1 945,762 + +0.4 945,770 - -3.3 945,781 - -2.1 945,781 - +1.6 945,868 - +0.4 945,921 + -2.2 945,921 + -0.3 945,921 + +0.8 945,921 + -1.4 945,921 + -1.6 945,921 + -2.7 945,921 + +1.1 945,921 + -1.2 945,921 + -3.0 945,921 + +0.4 945,921 + +2.0 945,921 + +0.4 945,924 - +1.0 945,929 - +3.7 945,929 - -2.3 945,929 - -1.4 945,929 - +3.9 945,929 - -3.0 945,929 - +0.0 945,929 - -0.2 945,929 - +1.0 946,011 + +0.8 946,065 + CCNA_00867 0.12 +0.1 946,065 - CCNA_00867 0.12 -0.8 946,065 - CCNA_00867 0.12 +2.1 946,132 + CCNA_00867 0.26 +1.9 946,135 - CCNA_00867 0.27 -0.4 946,143 + CCNA_00867 0.28 +0.9 946,143 + CCNA_00867 0.28 -2.5 946,146 + CCNA_00867 0.29 +0.7 946,151 - CCNA_00867 0.30 -1.0 946,151 - CCNA_00867 0.30 +0.6 946,151 - CCNA_00867 0.30 -2.4 946,151 - CCNA_00867 0.30 +2.4 946,161 + CCNA_00867 0.32 +1.4 946,168 - CCNA_00867 0.34 -1.3 946,190 + CCNA_00867 0.38 +0.0 946,190 + CCNA_00867 0.38 -1.4 946,198 - CCNA_00867 0.40 -1.2 946,198 - CCNA_00867 0.40 +2.4 946,237 + CCNA_00867 0.48 +1.2 946,237 + CCNA_00867 0.48 -0.1 946,245 - CCNA_00867 0.49 -2.0 946,245 - CCNA_00867 0.49 +2.4 946,245 - CCNA_00867 0.49 +0.5 946,245 - CCNA_00867 0.49 -1.9 946,245 - CCNA_00867 0.49 -0.1 946,246 - CCNA_00867 0.49 -0.6 946,304 + CCNA_00867 0.61 +1.3 946,304 + CCNA_00867 0.61 -3.8 946,304 + CCNA_00867 0.61 -0.0 946,312 - CCNA_00867 0.63 -0.0 946,312 - CCNA_00867 0.63 -0.2 946,312 - CCNA_00867 0.63 +0.7 946,312 - CCNA_00867 0.63 +1.0 946,312 - CCNA_00867 0.63 +0.9 946,324 + CCNA_00867 0.65 -0.5 946,324 + CCNA_00867 0.65 -1.6 946,324 + CCNA_00867 0.65 +0.2 946,324 + CCNA_00867 0.65 +0.5 946,332 - CCNA_00867 0.67 -0.6 946,334 + CCNA_00867 0.67 +0.3 946,340 + CCNA_00867 0.69 +1.4 946,376 + CCNA_00867 0.76 +0.9 946,381 + CCNA_00867 0.77 +0.6 946,389 - CCNA_00867 0.79 -0.1 946,405 + CCNA_00867 0.82 -0.2 946,405 + CCNA_00867 0.82 +1.6 946,413 - CCNA_00867 0.84 +1.1 946,457 + +0.3 946,464 + +2.8 946,494 - +1.2 946,509 + +0.0 946,509 + +1.0 946,509 + +1.1 946,509 + +1.8 946,509 + +0.8 946,509 + +0.6 946,509 + +0.8 946,509 + +1.2 946,517 - -0.4 946,553 - +0.3 946,589 + -2.3 946,609 - +1.0 946,655 + -0.3 946,656 + +0.6 946,656 + +1.9 946,658 - +0.6 946,664 - -0.8 946,685 + +0.8 946,711 - +0.3 946,727 - +0.4 946,741 + +1.0 946,767 - -1.4 946,809 + CCNA_03889 0.12 +0.1 946,815 + CCNA_03889 0.13 -0.4 946,815 + CCNA_03889 0.13 +0.8 946,815 + CCNA_03889 0.13 +0.9 946,815 + CCNA_03889 0.13 -0.9 946,815 + CCNA_03889 0.13 +0.7 946,823 - CCNA_03889 0.15 +0.6 946,827 + CCNA_03889 0.15 -1.7 946,827 + CCNA_03889 0.15 +1.4 946,876 + CCNA_03889 0.25 +0.5 946,917 + CCNA_03889 0.33 +1.4 946,917 + CCNA_03889 0.33 +0.2 946,917 + CCNA_03889 0.33 -1.2 946,925 - CCNA_03889 0.34 +1.6 946,925 - CCNA_03889 0.34 -0.9 946,925 - CCNA_03889 0.34 +0.3 946,944 + CCNA_03889 0.38 +0.1 946,962 + CCNA_03889 0.41 +0.6 946,963 + CCNA_03889 0.41 +0.8 946,963 + CCNA_03889 0.41 -1.3 946,963 + CCNA_03889 0.41 -2.5 946,970 - CCNA_03889 0.43 -0.8 946,978 + CCNA_03889 0.44 -0.1 946,981 + CCNA_03889 0.45 +1.3 946,986 - CCNA_03889 0.46 -1.1 946,996 + CCNA_03889 0.48 +0.8 946,998 - CCNA_03889 0.48 +0.8 947,004 - CCNA_03889 0.49 -0.5 947,010 + CCNA_03889 0.50 +0.3 947,031 + CCNA_03889 0.54 +0.4 947,062 - CCNA_03889 0.60 -1.9 947,088 + CCNA_03889 0.65 +0.5 947,107 + CCNA_03889 0.69 -0.3 947,109 - CCNA_03889 0.69 -0.1 947,115 - CCNA_03889 0.70 -1.0 947,203 + CCNA_03889 0.87 -0.2 947,211 - CCNA_03889 0.89 +0.4 947,231 + -0.5 947,237 + -1.0 947,247 + +2.0 947,262 + +1.2 947,262 + -0.6 947,262 + +0.1 947,262 + +1.9 947,262 + +0.0 947,262 + +1.0 947,269 + +1.4 947,269 + +1.2 947,271 + +0.2 947,274 + +0.6 947,282 - -0.5 947,306 + +1.4 947,356 + +0.3 947,358 - +0.5 947,364 - +0.3 947,391 + +0.7 947,418 + -1.5 947,418 + +0.2 947,442 + -1.5 947,452 + -2.2 947,485 - +0.5
Or see this region's nucleotide sequence