Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00747

Experiment: PYE 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00745 and CCNA_00746 overlap by 4 nucleotidesCCNA_00746 and CCNA_00747 are separated by 98 nucleotidesCCNA_00747 and CCNA_00748 are separated by 210 nucleotidesCCNA_00748 and CCNA_00749 are separated by 4 nucleotides CCNA_00745: CCNA_00745 - hypothetical protein, at 802,070 to 802,774 _00745 CCNA_00746: CCNA_00746 - ADA regulatory protein/O6-methylguanine-DNA, at 802,771 to 803,496 _00746 CCNA_00747: CCNA_00747 - cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF, at 803,595 to 804,953 _00747 CCNA_00748: CCNA_00748 - ferrous iron transport protein A, at 805,164 to 805,484 _00748 CCNA_00749: CCNA_00749 - ferrous iron transport protein B, at 805,489 to 807,384 _00749 Position (kb) 803 804 805Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 802.602 kb on - strand, within CCNA_00745at 802.618 kb on - strand, within CCNA_00745at 802.658 kb on + strand, within CCNA_00745at 802.680 kb on + strand, within CCNA_00745at 802.685 kb on + strand, within CCNA_00745at 802.693 kb on - strand, within CCNA_00745at 802.705 kb on - strandat 802.705 kb on - strandat 802.705 kb on - strandat 802.739 kb on + strandat 802.739 kb on + strandat 802.745 kb on + strandat 802.745 kb on + strandat 802.856 kb on - strand, within CCNA_00746at 802.865 kb on + strand, within CCNA_00746at 802.873 kb on - strand, within CCNA_00746at 802.884 kb on + strand, within CCNA_00746at 802.897 kb on + strand, within CCNA_00746at 802.906 kb on - strand, within CCNA_00746at 802.919 kb on + strand, within CCNA_00746at 802.919 kb on + strandat 802.919 kb on + strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.927 kb on - strand, within CCNA_00746at 802.932 kb on - strand, within CCNA_00746at 802.950 kb on + strand, within CCNA_00746at 802.952 kb on + strandat 802.992 kb on - strand, within CCNA_00746at 803.003 kb on + strand, within CCNA_00746at 803.003 kb on + strand, within CCNA_00746at 803.003 kb on + strand, within CCNA_00746at 803.003 kb on + strand, within CCNA_00746at 803.011 kb on - strand, within CCNA_00746at 803.011 kb on - strand, within CCNA_00746at 803.011 kb on - strand, within CCNA_00746at 803.020 kb on + strand, within CCNA_00746at 803.028 kb on - strand, within CCNA_00746at 803.028 kb on - strand, within CCNA_00746at 803.041 kb on + strand, within CCNA_00746at 803.052 kb on + strand, within CCNA_00746at 803.052 kb on + strand, within CCNA_00746at 803.060 kb on - strand, within CCNA_00746at 803.060 kb on - strand, within CCNA_00746at 803.108 kb on - strand, within CCNA_00746at 803.130 kb on + strand, within CCNA_00746at 803.151 kb on - strand, within CCNA_00746at 803.161 kb on + strand, within CCNA_00746at 803.181 kb on + strand, within CCNA_00746at 803.184 kb on - strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.226 kb on + strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strand, within CCNA_00746at 803.234 kb on - strandat 803.236 kb on + strand, within CCNA_00746at 803.244 kb on - strand, within CCNA_00746at 803.244 kb on - strand, within CCNA_00746at 803.254 kb on + strand, within CCNA_00746at 803.262 kb on - strand, within CCNA_00746at 803.262 kb on - strand, within CCNA_00746at 803.273 kb on + strand, within CCNA_00746at 803.287 kb on - strand, within CCNA_00746at 803.287 kb on - strand, within CCNA_00746at 803.289 kb on + strand, within CCNA_00746at 803.295 kb on - strand, within CCNA_00746at 803.295 kb on - strand, within CCNA_00746at 803.312 kb on + strand, within CCNA_00746at 803.375 kb on - strand, within CCNA_00746at 803.386 kb on + strand, within CCNA_00746at 803.394 kb on - strand, within CCNA_00746at 803.410 kb on + strand, within CCNA_00746at 803.432 kb on + strandat 803.440 kb on - strandat 803.440 kb on - strandat 803.482 kb on + strandat 803.482 kb on + strandat 803.482 kb on + strandat 803.482 kb on + strandat 803.490 kb on - strandat 803.490 kb on - strandat 803.490 kb on - strandat 803.521 kb on + strandat 803.549 kb on + strandat 803.570 kb on + strandat 803.578 kb on - strandat 803.591 kb on + strandat 803.599 kb on - strandat 803.603 kb on - strandat 803.658 kb on + strandat 803.658 kb on + strandat 803.661 kb on - strandat 803.661 kb on - strandat 803.666 kb on - strandat 803.703 kb on + strandat 803.717 kb on - strandat 803.777 kb on + strand, within CCNA_00747at 803.785 kb on - strand, within CCNA_00747at 803.804 kb on - strand, within CCNA_00747at 803.851 kb on + strand, within CCNA_00747at 803.861 kb on + strand, within CCNA_00747at 803.886 kb on - strand, within CCNA_00747at 803.950 kb on + strand, within CCNA_00747at 803.958 kb on - strand, within CCNA_00747at 803.978 kb on + strand, within CCNA_00747at 803.981 kb on - strand, within CCNA_00747at 804.022 kb on - strand, within CCNA_00747at 804.034 kb on + strand, within CCNA_00747at 804.040 kb on + strand, within CCNA_00747at 804.205 kb on + strand, within CCNA_00747at 804.205 kb on - strand, within CCNA_00747at 804.222 kb on + strand, within CCNA_00747at 804.240 kb on - strand, within CCNA_00747at 804.291 kb on + strand, within CCNA_00747at 804.316 kb on - strand, within CCNA_00747at 804.351 kb on + strand, within CCNA_00747at 804.368 kb on + strand, within CCNA_00747at 804.376 kb on - strand, within CCNA_00747at 804.376 kb on - strand, within CCNA_00747at 804.376 kb on - strand, within CCNA_00747at 804.392 kb on - strand, within CCNA_00747at 804.424 kb on - strand, within CCNA_00747at 804.429 kb on - strand, within CCNA_00747at 804.467 kb on - strand, within CCNA_00747at 804.527 kb on - strand, within CCNA_00747at 804.544 kb on + strand, within CCNA_00747at 804.544 kb on + strand, within CCNA_00747at 804.552 kb on - strand, within CCNA_00747at 804.552 kb on - strand, within CCNA_00747at 804.557 kb on + strand, within CCNA_00747at 804.557 kb on + strand, within CCNA_00747at 804.562 kb on + strand, within CCNA_00747at 804.565 kb on - strand, within CCNA_00747at 804.589 kb on + strand, within CCNA_00747at 804.620 kb on - strand, within CCNA_00747at 804.620 kb on - strand, within CCNA_00747at 804.653 kb on - strand, within CCNA_00747at 804.653 kb on - strand, within CCNA_00747at 804.672 kb on - strand, within CCNA_00747at 804.693 kb on + strand, within CCNA_00747at 804.693 kb on + strand, within CCNA_00747at 804.706 kb on - strand, within CCNA_00747at 804.722 kb on + strand, within CCNA_00747at 804.729 kb on + strand, within CCNA_00747at 804.729 kb on + strand, within CCNA_00747at 804.747 kb on + strand, within CCNA_00747at 804.753 kb on + strand, within CCNA_00747at 804.776 kb on - strand, within CCNA_00747at 804.810 kb on - strand, within CCNA_00747at 804.812 kb on + strand, within CCNA_00747at 804.820 kb on - strandat 804.822 kb on + strandat 804.832 kb on + strandat 804.840 kb on - strandat 804.848 kb on + strandat 804.856 kb on - strandat 804.856 kb on - strandat 804.862 kb on - strandat 804.867 kb on - strandat 804.867 kb on - strandat 804.890 kb on + strandat 804.890 kb on + strandat 804.901 kb on + strandat 804.901 kb on + strandat 804.904 kb on - strandat 804.904 kb on - strandat 804.909 kb on - strandat 804.914 kb on - strandat 804.924 kb on - strandat 804.924 kb on - strandat 804.931 kb on - strandat 804.937 kb on + strandat 804.974 kb on - strandat 804.979 kb on - strandat 804.981 kb on + strandat 804.984 kb on - strandat 805.156 kb on - strandat 805.158 kb on + strandat 805.158 kb on + strandat 805.219 kb on - strand, within CCNA_00748at 805.479 kb on + strandat 805.479 kb on + strandat 805.479 kb on + strandat 805.479 kb on + strandat 805.479 kb on + strandat 805.487 kb on - strandat 805.487 kb on - strandat 805.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days
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802,602 - CCNA_00745 0.75 +1.2
802,618 - CCNA_00745 0.78 +0.5
802,658 + CCNA_00745 0.83 -1.1
802,680 + CCNA_00745 0.87 -2.0
802,685 + CCNA_00745 0.87 -1.1
802,693 - CCNA_00745 0.88 -1.3
802,705 - -0.5
802,705 - -1.3
802,705 - -1.3
802,739 + -1.2
802,739 + +0.5
802,745 + -0.4
802,745 + -0.8
802,856 - CCNA_00746 0.12 -1.7
802,865 + CCNA_00746 0.13 +1.7
802,873 - CCNA_00746 0.14 -1.9
802,884 + CCNA_00746 0.16 +0.2
802,897 + CCNA_00746 0.17 -0.3
802,906 - CCNA_00746 0.19 +0.4
802,919 + CCNA_00746 0.20 +0.1
802,919 + +1.0
802,919 + CCNA_00746 0.20 +0.3
802,927 - CCNA_00746 0.21 +1.8
802,927 - CCNA_00746 0.21 -1.3
802,927 - CCNA_00746 0.21 +0.3
802,927 - CCNA_00746 0.21 -2.9
802,932 - CCNA_00746 0.22 -2.7
802,950 + CCNA_00746 0.25 +0.1
802,952 + +1.7
802,992 - CCNA_00746 0.30 -2.0
803,003 + CCNA_00746 0.32 +1.0
803,003 + CCNA_00746 0.32 +0.5
803,003 + CCNA_00746 0.32 -1.0
803,003 + CCNA_00746 0.32 -1.2
803,011 - CCNA_00746 0.33 +0.1
803,011 - CCNA_00746 0.33 +2.4
803,011 - CCNA_00746 0.33 +0.6
803,020 + CCNA_00746 0.34 -0.8
803,028 - CCNA_00746 0.35 +1.1
803,028 - CCNA_00746 0.35 -0.5
803,041 + CCNA_00746 0.37 -0.4
803,052 + CCNA_00746 0.39 -0.8
803,052 + CCNA_00746 0.39 -0.3
803,060 - CCNA_00746 0.40 +0.1
803,060 - CCNA_00746 0.40 +0.4
803,108 - CCNA_00746 0.46 +0.2
803,130 + CCNA_00746 0.49 -1.3
803,151 - CCNA_00746 0.52 +0.4
803,161 + CCNA_00746 0.54 +1.8
803,181 + CCNA_00746 0.56 -2.1
803,184 - CCNA_00746 0.57 +0.3
803,226 + CCNA_00746 0.63 -0.8
803,226 + CCNA_00746 0.63 +1.4
803,226 + CCNA_00746 0.63 +1.4
803,226 + CCNA_00746 0.63 +0.8
803,226 + CCNA_00746 0.63 -3.0
803,234 - CCNA_00746 0.64 +0.9
803,234 - CCNA_00746 0.64 -2.1
803,234 - CCNA_00746 0.64 +0.2
803,234 - +1.4
803,236 + CCNA_00746 0.64 +0.8
803,244 - CCNA_00746 0.65 -0.6
803,244 - CCNA_00746 0.65 -0.6
803,254 + CCNA_00746 0.67 -0.3
803,262 - CCNA_00746 0.68 -0.9
803,262 - CCNA_00746 0.68 +1.0
803,273 + CCNA_00746 0.69 -0.3
803,287 - CCNA_00746 0.71 -0.9
803,287 - CCNA_00746 0.71 -0.6
803,289 + CCNA_00746 0.71 +0.5
803,295 - CCNA_00746 0.72 +0.3
803,295 - CCNA_00746 0.72 -0.6
803,312 + CCNA_00746 0.75 +0.5
803,375 - CCNA_00746 0.83 -0.1
803,386 + CCNA_00746 0.85 -1.6
803,394 - CCNA_00746 0.86 -0.4
803,410 + CCNA_00746 0.88 -1.3
803,432 + -0.4
803,440 - +0.4
803,440 - +0.2
803,482 + -1.6
803,482 + -0.2
803,482 + +1.4
803,482 + -2.3
803,490 - +0.6
803,490 - -1.3
803,490 - -0.1
803,521 + -0.3
803,549 + -1.8
803,570 + -1.2
803,578 - -0.9
803,591 + -0.4
803,599 - +1.2
803,603 - -0.1
803,658 + -1.2
803,658 + -2.3
803,661 - +0.2
803,661 - +0.7
803,666 - -3.3
803,703 + -1.0
803,717 - -3.2
803,777 + CCNA_00747 0.13 +2.4
803,785 - CCNA_00747 0.14 -2.0
803,804 - CCNA_00747 0.15 -3.9
803,851 + CCNA_00747 0.19 -2.4
803,861 + CCNA_00747 0.20 -2.8
803,886 - CCNA_00747 0.21 -2.0
803,950 + CCNA_00747 0.26 +0.8
803,958 - CCNA_00747 0.27 -2.1
803,978 + CCNA_00747 0.28 +0.1
803,981 - CCNA_00747 0.28 -4.4
804,022 - CCNA_00747 0.31 -3.3
804,034 + CCNA_00747 0.32 -1.2
804,040 + CCNA_00747 0.33 -1.3
804,205 + CCNA_00747 0.45 +0.2
804,205 - CCNA_00747 0.45 -1.8
804,222 + CCNA_00747 0.46 +0.1
804,240 - CCNA_00747 0.47 -2.4
804,291 + CCNA_00747 0.51 -0.6
804,316 - CCNA_00747 0.53 -0.8
804,351 + CCNA_00747 0.56 -2.0
804,368 + CCNA_00747 0.57 -0.9
804,376 - CCNA_00747 0.57 -4.0
804,376 - CCNA_00747 0.57 -3.5
804,376 - CCNA_00747 0.57 -0.8
804,392 - CCNA_00747 0.59 +2.4
804,424 - CCNA_00747 0.61 -0.4
804,429 - CCNA_00747 0.61 -0.6
804,467 - CCNA_00747 0.64 -4.3
804,527 - CCNA_00747 0.69 -1.7
804,544 + CCNA_00747 0.70 -3.9
804,544 + CCNA_00747 0.70 -1.5
804,552 - CCNA_00747 0.70 -1.6
804,552 - CCNA_00747 0.70 -4.2
804,557 + CCNA_00747 0.71 -0.2
804,557 + CCNA_00747 0.71 +1.4
804,562 + CCNA_00747 0.71 -0.2
804,565 - CCNA_00747 0.71 -1.2
804,589 + CCNA_00747 0.73 -1.8
804,620 - CCNA_00747 0.75 -1.9
804,620 - CCNA_00747 0.75 -1.5
804,653 - CCNA_00747 0.78 -4.3
804,653 - CCNA_00747 0.78 -1.4
804,672 - CCNA_00747 0.79 -1.1
804,693 + CCNA_00747 0.81 +0.8
804,693 + CCNA_00747 0.81 -1.2
804,706 - CCNA_00747 0.82 -0.4
804,722 + CCNA_00747 0.83 +2.4
804,729 + CCNA_00747 0.83 -0.9
804,729 + CCNA_00747 0.83 +2.4
804,747 + CCNA_00747 0.85 +2.4
804,753 + CCNA_00747 0.85 +0.4
804,776 - CCNA_00747 0.87 -2.9
804,810 - CCNA_00747 0.89 -2.2
804,812 + CCNA_00747 0.90 +0.8
804,820 - +2.4
804,822 + -1.9
804,832 + +2.4
804,840 - -0.8
804,848 + +2.4
804,856 - -0.5
804,856 - -0.4
804,862 - +0.2
804,867 - +0.3
804,867 - +0.7
804,890 + +0.6
804,890 + -2.3
804,901 + +2.4
804,901 + -1.5
804,904 - -2.3
804,904 - -1.9
804,909 - -0.2
804,914 - +0.4
804,924 - +1.0
804,924 - -1.7
804,931 - +1.3
804,937 + -1.7
804,974 - -1.0
804,979 - -0.7
804,981 + -1.4
804,984 - -3.0
805,156 - -2.5
805,158 + -0.6
805,158 + +1.8
805,219 - CCNA_00748 0.17 +2.4
805,479 + +1.1
805,479 + +1.1
805,479 + +1.2
805,479 + +2.1
805,479 + +0.3
805,487 - -0.6
805,487 - +0.1
805,487 - +1.2

Or see this region's nucleotide sequence