Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00362

Experiment: PYE 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00360 and CCNA_00361 overlap by 4 nucleotidesCCNA_00361 and CCNA_00362 are separated by 51 nucleotidesCCNA_00362 and CCNA_00363 are separated by 36 nucleotidesCCNA_00363 and CCNA_00364 are separated by 78 nucleotides CCNA_00360: CCNA_00360 - alpha/beta hydrolase superfamily protein, at 376,916 to 377,806 _00360 CCNA_00361: CCNA_00361 - hot dog superfamily thioesterase, at 377,803 to 378,750 _00361 CCNA_00362: CCNA_00362 - zinc uptake regulation protein, at 378,802 to 379,287 _00362 CCNA_00363: CCNA_00363 - PAP2 bacterial acid phosphatase, at 379,324 to 380,100 _00363 CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273 _00364 Position (kb) 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 377.824 kb on - strandat 377.831 kb on - strandat 377.852 kb on + strandat 377.893 kb on + strandat 377.907 kb on + strand, within CCNA_00361at 377.915 kb on - strand, within CCNA_00361at 377.918 kb on + strand, within CCNA_00361at 377.918 kb on + strand, within CCNA_00361at 377.926 kb on - strand, within CCNA_00361at 377.930 kb on + strand, within CCNA_00361at 377.981 kb on + strand, within CCNA_00361at 377.991 kb on + strand, within CCNA_00361at 377.999 kb on - strand, within CCNA_00361at 377.999 kb on - strand, within CCNA_00361at 378.031 kb on + strand, within CCNA_00361at 378.031 kb on + strand, within CCNA_00361at 378.039 kb on - strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.052 kb on + strand, within CCNA_00361at 378.060 kb on - strand, within CCNA_00361at 378.060 kb on - strand, within CCNA_00361at 378.060 kb on - strand, within CCNA_00361at 378.060 kb on - strand, within CCNA_00361at 378.060 kb on - strand, within CCNA_00361at 378.090 kb on - strand, within CCNA_00361at 378.170 kb on + strand, within CCNA_00361at 378.181 kb on + strand, within CCNA_00361at 378.234 kb on + strand, within CCNA_00361at 378.242 kb on - strand, within CCNA_00361at 378.243 kb on - strand, within CCNA_00361at 378.258 kb on + strand, within CCNA_00361at 378.275 kb on + strand, within CCNA_00361at 378.283 kb on - strand, within CCNA_00361at 378.285 kb on + strand, within CCNA_00361at 378.287 kb on - strand, within CCNA_00361at 378.293 kb on - strand, within CCNA_00361at 378.293 kb on - strand, within CCNA_00361at 378.298 kb on + strand, within CCNA_00361at 378.301 kb on - strand, within CCNA_00361at 378.353 kb on + strand, within CCNA_00361at 378.434 kb on - strand, within CCNA_00361at 378.448 kb on - strand, within CCNA_00361at 378.453 kb on + strand, within CCNA_00361at 378.453 kb on + strandat 378.520 kb on + strand, within CCNA_00361at 378.528 kb on - strand, within CCNA_00361at 378.537 kb on + strand, within CCNA_00361at 378.554 kb on + strand, within CCNA_00361at 378.567 kb on + strand, within CCNA_00361at 378.585 kb on + strand, within CCNA_00361at 378.593 kb on - strand, within CCNA_00361at 378.593 kb on - strand, within CCNA_00361at 378.632 kb on - strand, within CCNA_00361at 378.633 kb on - strand, within CCNA_00361at 378.656 kb on - strandat 378.658 kb on - strandat 378.665 kb on + strandat 378.687 kb on + strandat 378.823 kb on - strandat 378.826 kb on + strandat 378.870 kb on - strand, within CCNA_00362at 378.896 kb on - strand, within CCNA_00362at 378.992 kb on + strand, within CCNA_00362at 379.099 kb on + strand, within CCNA_00362at 379.104 kb on + strand, within CCNA_00362at 379.112 kb on - strand, within CCNA_00362at 379.177 kb on - strand, within CCNA_00362at 379.177 kb on - strand, within CCNA_00362at 379.285 kb on - strandat 379.285 kb on - strandat 379.288 kb on + strandat 379.324 kb on + strandat 379.324 kb on + strandat 379.330 kb on - strandat 379.332 kb on - strandat 379.334 kb on + strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.454 kb on - strand, within CCNA_00363at 379.464 kb on - strand, within CCNA_00363at 379.486 kb on + strand, within CCNA_00363at 379.508 kb on + strand, within CCNA_00363at 379.514 kb on - strand, within CCNA_00363at 379.514 kb on - strand, within CCNA_00363at 379.544 kb on + strand, within CCNA_00363at 379.552 kb on - strand, within CCNA_00363at 379.557 kb on - strand, within CCNA_00363at 379.557 kb on - strand, within CCNA_00363at 379.557 kb on - strand, within CCNA_00363at 379.559 kb on - strand, within CCNA_00363at 379.561 kb on + strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.594 kb on - strand, within CCNA_00363at 379.602 kb on + strand, within CCNA_00363at 379.610 kb on - strand, within CCNA_00363at 379.742 kb on - strand, within CCNA_00363at 379.790 kb on - strand, within CCNA_00363at 379.881 kb on + strand, within CCNA_00363at 379.900 kb on + strand, within CCNA_00363at 379.902 kb on + strand, within CCNA_00363at 379.958 kb on - strand, within CCNA_00363at 379.958 kb on - strand, within CCNA_00363at 379.960 kb on - strand, within CCNA_00363at 379.981 kb on - strand, within CCNA_00363at 380.003 kb on + strand, within CCNA_00363at 380.011 kb on - strand, within CCNA_00363at 380.011 kb on - strand, within CCNA_00363at 380.011 kb on - strand, within CCNA_00363at 380.011 kb on - strand, within CCNA_00363at 380.056 kb on + strandat 380.061 kb on + strandat 380.069 kb on - strandat 380.069 kb on - strandat 380.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days
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377,824 - -0.9
377,831 - +0.1
377,852 + +0.1
377,893 + +1.0
377,907 + CCNA_00361 0.11 -0.1
377,915 - CCNA_00361 0.12 -0.3
377,918 + CCNA_00361 0.12 +0.2
377,918 + CCNA_00361 0.12 +0.4
377,926 - CCNA_00361 0.13 +0.5
377,930 + CCNA_00361 0.13 -3.2
377,981 + CCNA_00361 0.19 -1.3
377,991 + CCNA_00361 0.20 -1.4
377,999 - CCNA_00361 0.21 +0.0
377,999 - CCNA_00361 0.21 +0.9
378,031 + CCNA_00361 0.24 +1.9
378,031 + CCNA_00361 0.24 -0.5
378,039 - CCNA_00361 0.25 -0.5
378,052 + CCNA_00361 0.26 -1.1
378,052 + CCNA_00361 0.26 -0.3
378,052 + CCNA_00361 0.26 -0.1
378,052 + CCNA_00361 0.26 -0.4
378,052 + CCNA_00361 0.26 +0.3
378,052 + CCNA_00361 0.26 -2.5
378,060 - CCNA_00361 0.27 -0.2
378,060 - CCNA_00361 0.27 -0.8
378,060 - CCNA_00361 0.27 +0.1
378,060 - CCNA_00361 0.27 -0.8
378,060 - CCNA_00361 0.27 +0.9
378,090 - CCNA_00361 0.30 +3.6
378,170 + CCNA_00361 0.39 +1.4
378,181 + CCNA_00361 0.40 -1.8
378,234 + CCNA_00361 0.45 -1.2
378,242 - CCNA_00361 0.46 +1.0
378,243 - CCNA_00361 0.46 +0.3
378,258 + CCNA_00361 0.48 -0.4
378,275 + CCNA_00361 0.50 -0.5
378,283 - CCNA_00361 0.51 +0.4
378,285 + CCNA_00361 0.51 +0.7
378,287 - CCNA_00361 0.51 -1.0
378,293 - CCNA_00361 0.52 +0.2
378,293 - CCNA_00361 0.52 +0.5
378,298 + CCNA_00361 0.52 +1.6
378,301 - CCNA_00361 0.53 -0.5
378,353 + CCNA_00361 0.58 -1.7
378,434 - CCNA_00361 0.67 -0.3
378,448 - CCNA_00361 0.68 +0.4
378,453 + CCNA_00361 0.69 -1.5
378,453 + -0.9
378,520 + CCNA_00361 0.76 +0.9
378,528 - CCNA_00361 0.76 -0.9
378,537 + CCNA_00361 0.77 +0.3
378,554 + CCNA_00361 0.79 +0.6
378,567 + CCNA_00361 0.81 +0.6
378,585 + CCNA_00361 0.82 -0.2
378,593 - CCNA_00361 0.83 +0.7
378,593 - CCNA_00361 0.83 -0.2
378,632 - CCNA_00361 0.87 +0.4
378,633 - CCNA_00361 0.88 -0.6
378,656 - +1.9
378,658 - -1.2
378,665 + +2.7
378,687 + +0.9
378,823 - +0.5
378,826 + -0.5
378,870 - CCNA_00362 0.14 +0.9
378,896 - CCNA_00362 0.19 -3.1
378,992 + CCNA_00362 0.39 -0.7
379,099 + CCNA_00362 0.61 +0.3
379,104 + CCNA_00362 0.62 -1.3
379,112 - CCNA_00362 0.64 -2.6
379,177 - CCNA_00362 0.77 -3.6
379,177 - CCNA_00362 0.77 -0.7
379,285 - +0.5
379,285 - -1.2
379,288 + -1.3
379,324 + -2.0
379,324 + +0.3
379,330 - +2.3
379,332 - -1.3
379,334 + -1.4
379,342 - -1.4
379,342 - -0.9
379,342 - +1.7
379,454 - CCNA_00363 0.17 +0.6
379,464 - CCNA_00363 0.18 -0.3
379,486 + CCNA_00363 0.21 -0.8
379,508 + CCNA_00363 0.24 -1.6
379,514 - CCNA_00363 0.24 -1.1
379,514 - CCNA_00363 0.24 +0.7
379,544 + CCNA_00363 0.28 -0.9
379,552 - CCNA_00363 0.29 +0.5
379,557 - CCNA_00363 0.30 +0.7
379,557 - CCNA_00363 0.30 +0.8
379,557 - CCNA_00363 0.30 -1.1
379,559 - CCNA_00363 0.30 +0.9
379,561 + CCNA_00363 0.31 +2.0
379,569 - CCNA_00363 0.32 -0.5
379,569 - CCNA_00363 0.32 +0.7
379,594 - CCNA_00363 0.35 +0.3
379,602 + CCNA_00363 0.36 -2.3
379,610 - CCNA_00363 0.37 -0.1
379,742 - CCNA_00363 0.54 -0.7
379,790 - CCNA_00363 0.60 -0.1
379,881 + CCNA_00363 0.72 +0.9
379,900 + CCNA_00363 0.74 -1.9
379,902 + CCNA_00363 0.74 +0.3
379,958 - CCNA_00363 0.82 +0.9
379,958 - CCNA_00363 0.82 -0.5
379,960 - CCNA_00363 0.82 -0.6
379,981 - CCNA_00363 0.85 +0.5
380,003 + CCNA_00363 0.87 -0.1
380,011 - CCNA_00363 0.88 -1.6
380,011 - CCNA_00363 0.88 +1.2
380,011 - CCNA_00363 0.88 -0.5
380,011 - CCNA_00363 0.88 -0.5
380,056 + -0.6
380,061 + -0.3
380,069 - +0.4
380,069 - +2.4
380,107 - +0.1

Or see this region's nucleotide sequence