Experiment: PYE 4C survival rep3 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00317 and CCNA_00318 are separated by 207 nucleotides CCNA_00318 and CCNA_00319 are separated by 85 nucleotides CCNA_00319 and CCNA_00320 are separated by 182 nucleotides
CCNA_00317: CCNA_00317 - GTP-binding protein CgtA, at 331,907 to 332,971
_00317
CCNA_00318: CCNA_00318 - hypothetical protein, at 333,179 to 334,138
_00318
CCNA_00319: CCNA_00319 - acetyltransferase, GNAT family, at 334,224 to 334,757
_00319
CCNA_00320: CCNA_00320 - LSU ribosomal protein L27P, at 334,940 to 335,209
_00320
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 333.016 kb on - strand at 333.036 kb on - strand at 333.037 kb on - strand at 333.056 kb on - strand at 333.066 kb on - strand at 333.081 kb on + strand at 333.232 kb on + strand at 333.256 kb on + strand at 333.264 kb on - strand at 333.268 kb on + strand at 333.364 kb on - strand, within CCNA_00318 at 333.377 kb on - strand, within CCNA_00318 at 333.381 kb on + strand, within CCNA_00318 at 333.396 kb on + strand, within CCNA_00318 at 333.416 kb on + strand, within CCNA_00318 at 333.419 kb on - strand, within CCNA_00318 at 333.419 kb on - strand, within CCNA_00318 at 333.419 kb on - strand, within CCNA_00318 at 333.419 kb on - strand, within CCNA_00318 at 333.419 kb on - strand, within CCNA_00318 at 333.424 kb on - strand, within CCNA_00318 at 333.444 kb on + strand, within CCNA_00318 at 333.456 kb on + strand, within CCNA_00318 at 333.464 kb on - strand, within CCNA_00318 at 333.481 kb on + strand, within CCNA_00318 at 333.515 kb on + strand, within CCNA_00318 at 333.523 kb on - strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.652 kb on + strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.660 kb on - strand, within CCNA_00318 at 333.689 kb on + strand, within CCNA_00318 at 333.689 kb on - strand, within CCNA_00318 at 333.691 kb on + strand, within CCNA_00318 at 333.691 kb on + strand, within CCNA_00318 at 333.691 kb on + strand, within CCNA_00318 at 333.699 kb on - strand, within CCNA_00318 at 333.699 kb on - strand, within CCNA_00318 at 333.755 kb on - strand, within CCNA_00318 at 333.775 kb on - strand, within CCNA_00318 at 333.841 kb on - strand, within CCNA_00318 at 333.858 kb on - strand, within CCNA_00318 at 333.859 kb on - strand, within CCNA_00318 at 333.878 kb on - strand, within CCNA_00318 at 333.924 kb on - strand, within CCNA_00318 at 333.967 kb on + strand, within CCNA_00318 at 333.967 kb on - strand, within CCNA_00318 at 333.978 kb on + strand, within CCNA_00318 at 334.016 kb on - strand, within CCNA_00318 at 334.029 kb on + strand, within CCNA_00318 at 334.056 kb on + strand at 334.056 kb on + strand at 334.056 kb on + strand at 334.056 kb on + strand at 334.077 kb on - strand at 334.100 kb on + strand at 334.122 kb on - strand at 334.131 kb on - strand at 334.133 kb on + strand at 334.133 kb on + strand at 334.141 kb on - strand at 334.159 kb on - strand at 334.201 kb on + strand at 334.209 kb on - strand at 334.221 kb on - strand at 334.295 kb on + strand, within CCNA_00319 at 334.303 kb on - strand, within CCNA_00319 at 334.305 kb on - strand, within CCNA_00319 at 334.305 kb on - strand, within CCNA_00319 at 334.309 kb on + strand, within CCNA_00319 at 334.310 kb on + strand, within CCNA_00319 at 334.340 kb on - strand, within CCNA_00319 at 334.340 kb on - strand, within CCNA_00319 at 334.376 kb on + strand, within CCNA_00319 at 334.386 kb on + strand, within CCNA_00319 at 334.401 kb on + strand, within CCNA_00319 at 334.421 kb on + strand, within CCNA_00319 at 334.434 kb on + strand, within CCNA_00319 at 334.434 kb on + strand, within CCNA_00319 at 334.454 kb on - strand, within CCNA_00319 at 334.523 kb on - strand, within CCNA_00319 at 334.559 kb on - strand, within CCNA_00319 at 334.561 kb on + strand, within CCNA_00319 at 334.566 kb on + strand, within CCNA_00319 at 334.585 kb on + strand, within CCNA_00319 at 334.595 kb on + strand, within CCNA_00319 at 334.631 kb on - strand, within CCNA_00319 at 334.692 kb on - strand, within CCNA_00319 at 334.698 kb on - strand, within CCNA_00319 at 334.717 kb on - strand at 334.755 kb on + strand at 334.770 kb on + strand at 334.771 kb on - strand at 334.821 kb on - strand at 334.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days remove 333,016 - -0.7 333,036 - -3.5 333,037 - +0.3 333,056 - +0.2 333,066 - -1.5 333,081 + -2.3 333,232 + -0.5 333,256 + -1.1 333,264 - -0.0 333,268 + -1.1 333,364 - CCNA_00318 0.19 -1.2 333,377 - CCNA_00318 0.21 -0.9 333,381 + CCNA_00318 0.21 -3.3 333,396 + CCNA_00318 0.23 +0.5 333,416 + CCNA_00318 0.25 -1.1 333,419 - CCNA_00318 0.25 -2.3 333,419 - CCNA_00318 0.25 -0.5 333,419 - CCNA_00318 0.25 -3.0 333,419 - CCNA_00318 0.25 -2.6 333,419 - CCNA_00318 0.25 -0.9 333,424 - CCNA_00318 0.26 -2.1 333,444 + CCNA_00318 0.28 -0.5 333,456 + CCNA_00318 0.29 -1.3 333,464 - CCNA_00318 0.30 +0.6 333,481 + CCNA_00318 0.31 -1.3 333,515 + CCNA_00318 0.35 -2.1 333,523 - CCNA_00318 0.36 -1.7 333,652 + CCNA_00318 0.49 -0.9 333,652 + CCNA_00318 0.49 -0.7 333,652 + CCNA_00318 0.49 +0.2 333,652 + CCNA_00318 0.49 -2.5 333,652 + CCNA_00318 0.49 +0.1 333,652 + CCNA_00318 0.49 -2.8 333,652 + CCNA_00318 0.49 -2.3 333,660 - CCNA_00318 0.50 +0.9 333,660 - CCNA_00318 0.50 +0.7 333,660 - CCNA_00318 0.50 -0.9 333,660 - CCNA_00318 0.50 -0.3 333,660 - CCNA_00318 0.50 +0.3 333,660 - CCNA_00318 0.50 -0.8 333,660 - CCNA_00318 0.50 -2.4 333,660 - CCNA_00318 0.50 -1.1 333,660 - CCNA_00318 0.50 +0.4 333,660 - CCNA_00318 0.50 +1.9 333,660 - CCNA_00318 0.50 -0.9 333,660 - CCNA_00318 0.50 +1.9 333,660 - CCNA_00318 0.50 +1.9 333,660 - CCNA_00318 0.50 -1.9 333,660 - CCNA_00318 0.50 -1.0 333,689 + CCNA_00318 0.53 -1.1 333,689 - CCNA_00318 0.53 +1.3 333,691 + CCNA_00318 0.53 -0.0 333,691 + CCNA_00318 0.53 -1.1 333,691 + CCNA_00318 0.53 +0.4 333,699 - CCNA_00318 0.54 -0.8 333,699 - CCNA_00318 0.54 -0.1 333,755 - CCNA_00318 0.60 -0.2 333,775 - CCNA_00318 0.62 +0.9 333,841 - CCNA_00318 0.69 -1.8 333,858 - CCNA_00318 0.71 +3.4 333,859 - CCNA_00318 0.71 -0.4 333,878 - CCNA_00318 0.73 -0.8 333,924 - CCNA_00318 0.78 +0.5 333,967 + CCNA_00318 0.82 -0.2 333,967 - CCNA_00318 0.82 -0.1 333,978 + CCNA_00318 0.83 -1.2 334,016 - CCNA_00318 0.87 -1.8 334,029 + CCNA_00318 0.89 -0.7 334,056 + +0.2 334,056 + -0.1 334,056 + -0.9 334,056 + +0.9 334,077 - +0.6 334,100 + -1.2 334,122 - +0.4 334,131 - -0.2 334,133 + -1.1 334,133 + -1.5 334,141 - -0.1 334,159 - +1.0 334,201 + -0.0 334,209 - +1.1 334,221 - +0.2 334,295 + CCNA_00319 0.13 -2.7 334,303 - CCNA_00319 0.15 +0.2 334,305 - CCNA_00319 0.15 +0.2 334,305 - CCNA_00319 0.15 -0.5 334,309 + CCNA_00319 0.16 -4.2 334,310 + CCNA_00319 0.16 -1.5 334,340 - CCNA_00319 0.22 +0.4 334,340 - CCNA_00319 0.22 +0.4 334,376 + CCNA_00319 0.28 +0.3 334,386 + CCNA_00319 0.30 -1.3 334,401 + CCNA_00319 0.33 -0.1 334,421 + CCNA_00319 0.37 +0.6 334,434 + CCNA_00319 0.39 -2.1 334,434 + CCNA_00319 0.39 -0.1 334,454 - CCNA_00319 0.43 -0.3 334,523 - CCNA_00319 0.56 -0.7 334,559 - CCNA_00319 0.63 -0.5 334,561 + CCNA_00319 0.63 -0.1 334,566 + CCNA_00319 0.64 -1.7 334,585 + CCNA_00319 0.68 +0.9 334,595 + CCNA_00319 0.69 -2.5 334,631 - CCNA_00319 0.76 -0.7 334,692 - CCNA_00319 0.88 +1.1 334,698 - CCNA_00319 0.89 +0.9 334,717 - -1.2 334,755 + -2.8 334,770 + -0.6 334,771 - +1.0 334,821 - +0.2 334,903 - -0.3
Or see this region's nucleotide sequence