Experiment: PYE 4C survival rep3 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00293 and CCNA_00294 are separated by 59 nucleotides CCNA_00294 and CCNA_00295 are separated by 25 nucleotides CCNA_00295 and CCNA_00296 are separated by 21 nucleotides
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634
_00294
CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352
_00295
CCNA_00296: CCNA_00296 - phosphate regulon response regulator PhoB, at 310,374 to 311,066
_00296
Position (kb) 308
309
310 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 307.871 kb on + strand, within CCNA_00293 at 307.984 kb on + strand at 308.038 kb on + strand, within CCNA_00293 at 308.704 kb on - strand at 308.750 kb on + strand at 308.786 kb on - strand at 308.802 kb on - strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.929 kb on + strand, within CCNA_00294 at 309.555 kb on + strand at 309.633 kb on + strand at 310.315 kb on + strand at 310.324 kb on + strand at 310.347 kb on + strand at 310.353 kb on + strand at 310.401 kb on + strand at 310.410 kb on + strand at 310.418 kb on - strand at 310.418 kb on - strand at 310.423 kb on - strand at 310.454 kb on - strand, within CCNA_00296 at 310.484 kb on - strand, within CCNA_00296 at 310.493 kb on - strand, within CCNA_00296 at 310.549 kb on - strand, within CCNA_00296 at 310.549 kb on - strand, within CCNA_00296 at 310.602 kb on + strand, within CCNA_00296 at 310.602 kb on + strand, within CCNA_00296
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days remove 307,871 + CCNA_00293 0.32 -1.0 307,984 + -0.7 308,038 + CCNA_00293 0.45 +0.3 308,704 - -3.0 308,750 + -0.1 308,786 - +0.3 308,802 - -2.5 308,806 + -1.0 308,806 + -0.9 308,806 + +1.2 308,806 + +0.4 308,806 + -2.4 308,806 + -0.7 308,806 + -0.2 308,806 + +0.6 308,806 + -2.6 308,806 + -1.5 308,806 + -1.0 308,814 - -3.1 308,814 - -1.5 308,814 - -1.3 308,814 - -1.2 308,814 - -1.9 308,814 - -2.3 308,814 - +0.8 308,814 - -0.7 308,929 + CCNA_00294 0.14 -0.5 309,555 + -0.2 309,633 + -0.8 310,315 + +1.8 310,324 + -1.5 310,347 + +0.5 310,353 + +0.2 310,401 + -3.2 310,410 + -4.3 310,418 - -1.5 310,418 - -4.5 310,423 - -2.9 310,454 - CCNA_00296 0.12 -2.2 310,484 - CCNA_00296 0.16 -5.4 310,493 - CCNA_00296 0.17 -2.2 310,549 - CCNA_00296 0.25 -2.4 310,549 - CCNA_00296 0.25 -2.3 310,602 + CCNA_00296 0.33 -4.1 310,602 + CCNA_00296 0.33 -1.7
Or see this region's nucleotide sequence