Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1613 and rpmH are separated by 47 nucleotides rpmH and rnpA are separated by 5 nucleotides rnpA and Synpcc7942_1616 overlap by 14 nucleotides Synpcc7942_1616 and yidC are separated by 202 nucleotides
Synpcc7942_1613: Synpcc7942_1613 - hypothetical protein, at 1,682,042 to 1,682,617
_1613
Synpcc7942_1614: rpmH - 50S ribosomal protein L34, at 1,682,665 to 1,682,802
rpmH
Synpcc7942_1615: rnpA - ribonuclease P, at 1,682,808 to 1,683,176
rnpA
Synpcc7942_1616: Synpcc7942_1616 - hypothetical protein, at 1,683,163 to 1,683,549
_1616
Synpcc7942_1617: yidC - putative inner membrane protein translocase component YidC, at 1,683,752 to 1,684,930
yidC
Position (kb) 1683
1684 Strain fitness (log2 ratio) -2
-1
0
1 at 1682.805 kb on - strand at 1683.190 kb on - strand at 1683.201 kb on + strand at 1683.209 kb on - strand, within Synpcc7942_1616 at 1683.258 kb on - strand, within Synpcc7942_1616 at 1683.263 kb on - strand, within Synpcc7942_1616 at 1683.573 kb on + strand at 1683.581 kb on - strand at 1683.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,682,805 - -0.2 1,683,190 - -0.8 1,683,201 + -0.7 1,683,209 - Synpcc7942_1616 0.12 -1.8 1,683,258 - Synpcc7942_1616 0.25 -1.1 1,683,263 - Synpcc7942_1616 0.26 -0.9 1,683,573 + -1.5 1,683,581 - +0.1 1,683,581 - -0.8
Or see this region's nucleotide sequence