Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroK and Synpcc7942_0895 are separated by 67 nucleotides Synpcc7942_0895 and minD are separated by 174 nucleotides minD and minE are separated by 14 nucleotides
Synpcc7942_0894: aroK - shikimate kinase, at 904,845 to 905,417
aroK
Synpcc7942_0895: Synpcc7942_0895 - hypothetical protein, at 905,485 to 906,657
_0895
Synpcc7942_0896: minD - septum site-determining protein MinD, at 906,832 to 907,638
minD
Synpcc7942_0897: minE - cell division topological specificity factor MinE, at 907,653 to 907,928
minE
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 904.514 kb on + strand at 904.515 kb on + strand at 904.523 kb on - strand at 904.541 kb on + strand at 904.541 kb on + strand at 904.571 kb on + strand at 904.579 kb on - strand at 904.579 kb on - strand at 904.579 kb on - strand at 904.594 kb on + strand at 904.602 kb on - strand at 904.602 kb on - strand at 904.680 kb on - strand at 904.744 kb on - strand at 904.798 kb on + strand at 904.803 kb on + strand at 904.803 kb on + strand at 905.457 kb on + strand at 905.467 kb on + strand at 905.467 kb on + strand at 905.467 kb on + strand at 905.467 kb on + strand at 905.467 kb on + strand at 905.467 kb on + strand at 906.638 kb on + strand at 906.640 kb on + strand at 906.648 kb on - strand at 906.661 kb on + strand at 906.710 kb on - strand at 906.717 kb on + strand at 906.717 kb on + strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.740 kb on + strand at 906.740 kb on + strand at 906.750 kb on + strand at 906.750 kb on + strand at 906.758 kb on - strand at 906.772 kb on + strand at 906.773 kb on + strand at 906.773 kb on + strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.829 kb on + strand at 906.829 kb on - strand at 906.854 kb on + strand at 906.855 kb on - strand at 906.866 kb on - strand at 906.914 kb on - strand, within minD at 906.914 kb on - strand, within minD at 906.968 kb on - strand, within minD at 907.010 kb on + strand, within minD at 907.053 kb on + strand, within minD at 907.060 kb on + strand, within minD at 907.061 kb on - strand, within minD at 907.091 kb on - strand, within minD at 907.096 kb on + strand at 907.104 kb on - strand, within minD at 907.132 kb on - strand, within minD at 907.143 kb on + strand, within minD at 907.145 kb on + strand, within minD at 907.218 kb on - strand, within minD at 907.251 kb on - strand, within minD at 907.284 kb on - strand, within minD at 907.286 kb on - strand, within minD at 907.314 kb on - strand, within minD at 907.452 kb on + strand, within minD at 907.469 kb on + strand, within minD at 907.532 kb on - strand, within minD at 907.547 kb on - strand, within minD at 907.555 kb on + strand, within minD at 907.579 kb on - strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 904,514 + +0.2 904,515 + +0.6 904,523 - +0.8 904,541 + +0.4 904,541 + -0.2 904,571 + -0.2 904,579 - -0.9 904,579 - +0.5 904,579 - -0.0 904,594 + -1.1 904,602 - -0.1 904,602 - +1.1 904,680 - -2.4 904,744 - +0.4 904,798 + +1.1 904,803 + +0.9 904,803 + +0.7 905,457 + -1.0 905,467 + +0.7 905,467 + -1.4 905,467 + -0.1 905,467 + -0.2 905,467 + -0.5 905,467 + +0.2 906,638 + +0.4 906,640 + -0.0 906,648 - +0.8 906,661 + -0.5 906,710 - +0.3 906,717 + -0.1 906,717 + +0.1 906,725 - -0.7 906,725 - +0.5 906,725 - +0.4 906,740 + -0.5 906,740 + +1.1 906,750 + -0.7 906,750 + -0.1 906,758 - -0.7 906,772 + +1.3 906,773 + -0.4 906,773 + -0.5 906,781 - -0.4 906,781 - -0.1 906,781 - -2.1 906,829 + -0.7 906,829 - -0.3 906,854 + -0.6 906,855 - -1.7 906,866 - +0.5 906,914 - minD Synpcc7942_0896 0.10 -0.2 906,914 - minD Synpcc7942_0896 0.10 -3.0 906,968 - minD Synpcc7942_0896 0.17 -1.7 907,010 + minD Synpcc7942_0896 0.22 -0.2 907,053 + minD Synpcc7942_0896 0.27 -1.2 907,060 + minD Synpcc7942_0896 0.28 -1.5 907,061 - minD Synpcc7942_0896 0.28 -0.5 907,091 - minD Synpcc7942_0896 0.32 -1.0 907,096 + +0.5 907,104 - minD Synpcc7942_0896 0.34 -2.0 907,132 - minD Synpcc7942_0896 0.37 -2.9 907,143 + minD Synpcc7942_0896 0.39 -0.6 907,145 + minD Synpcc7942_0896 0.39 -1.5 907,218 - minD Synpcc7942_0896 0.48 +1.4 907,251 - minD Synpcc7942_0896 0.52 -1.2 907,284 - minD Synpcc7942_0896 0.56 -0.7 907,286 - minD Synpcc7942_0896 0.56 +0.7 907,314 - minD Synpcc7942_0896 0.60 -2.8 907,452 + minD Synpcc7942_0896 0.77 -1.2 907,469 + minD Synpcc7942_0896 0.79 -1.1 907,532 - minD Synpcc7942_0896 0.87 -1.3 907,547 - minD Synpcc7942_0896 0.89 -0.8 907,555 + minD Synpcc7942_0896 0.90 -0.3 907,579 - -0.2 907,582 + +0.3 907,582 + -1.5 907,582 + -0.3 907,582 + -0.7 907,582 + -0.3 907,582 + -0.6 907,582 + -1.5 907,590 - -0.4 907,590 - -1.1 907,590 - -2.1 907,590 - -2.7
Or see this region's nucleotide sequence