Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_909

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_908 and Pf6N2E2_909 overlap by 11 nucleotidesPf6N2E2_909 and Pf6N2E2_910 are separated by 561 nucleotides Pf6N2E2_908 - FIG00464231: hypothetical protein, at 1,063,519 to 1,067,034 _908 Pf6N2E2_909 - VrlR-like protein, at 1,067,024 to 1,067,599 _909 Pf6N2E2_910 - ATPase involved in DNA repair, at 1,068,161 to 1,071,154 _910 Position (kb) 1067 1068Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1066.050 kb on + strand, within Pf6N2E2_908at 1066.050 kb on + strand, within Pf6N2E2_908at 1066.051 kb on - strand, within Pf6N2E2_908at 1066.087 kb on - strand, within Pf6N2E2_908at 1066.137 kb on + strand, within Pf6N2E2_908at 1066.227 kb on + strand, within Pf6N2E2_908at 1066.227 kb on + strand, within Pf6N2E2_908at 1066.270 kb on + strand, within Pf6N2E2_908at 1066.270 kb on + strand, within Pf6N2E2_908at 1066.271 kb on - strand, within Pf6N2E2_908at 1066.321 kb on + strand, within Pf6N2E2_908at 1066.391 kb on + strand, within Pf6N2E2_908at 1066.391 kb on + strand, within Pf6N2E2_908at 1066.391 kb on + strand, within Pf6N2E2_908at 1066.391 kb on + strand, within Pf6N2E2_908at 1066.391 kb on + strand, within Pf6N2E2_908at 1066.392 kb on - strand, within Pf6N2E2_908at 1066.430 kb on - strand, within Pf6N2E2_908at 1066.451 kb on + strand, within Pf6N2E2_908at 1066.451 kb on + strand, within Pf6N2E2_908at 1066.452 kb on - strand, within Pf6N2E2_908at 1066.452 kb on - strand, within Pf6N2E2_908at 1066.505 kb on - strand, within Pf6N2E2_908at 1066.521 kb on + strand, within Pf6N2E2_908at 1066.557 kb on - strand, within Pf6N2E2_908at 1066.557 kb on - strand, within Pf6N2E2_908at 1066.557 kb on - strand, within Pf6N2E2_908at 1066.560 kb on + strand, within Pf6N2E2_908at 1066.561 kb on - strand, within Pf6N2E2_908at 1066.579 kb on + strand, within Pf6N2E2_908at 1066.579 kb on + strand, within Pf6N2E2_908at 1066.594 kb on + strand, within Pf6N2E2_908at 1066.645 kb on + strand, within Pf6N2E2_908at 1066.840 kb on + strandat 1066.862 kb on + strandat 1066.862 kb on + strandat 1066.863 kb on - strandat 1067.052 kb on + strandat 1067.052 kb on + strandat 1067.052 kb on + strandat 1067.052 kb on + strandat 1067.053 kb on - strandat 1067.111 kb on + strand, within Pf6N2E2_909at 1067.111 kb on + strand, within Pf6N2E2_909at 1067.247 kb on - strand, within Pf6N2E2_909at 1067.291 kb on + strand, within Pf6N2E2_909at 1067.291 kb on + strand, within Pf6N2E2_909at 1067.292 kb on - strand, within Pf6N2E2_909at 1067.327 kb on + strand, within Pf6N2E2_909at 1067.380 kb on + strand, within Pf6N2E2_909at 1067.462 kb on - strand, within Pf6N2E2_909at 1067.464 kb on + strand, within Pf6N2E2_909at 1067.465 kb on - strand, within Pf6N2E2_909at 1067.465 kb on - strand, within Pf6N2E2_909at 1067.512 kb on + strand, within Pf6N2E2_909at 1067.513 kb on - strand, within Pf6N2E2_909at 1067.618 kb on - strandat 1067.739 kb on + strandat 1067.739 kb on + strandat 1067.739 kb on + strandat 1067.740 kb on - strandat 1067.740 kb on - strandat 1067.740 kb on - strandat 1067.844 kb on + strandat 1067.844 kb on + strandat 1067.874 kb on - strandat 1067.891 kb on + strandat 1067.904 kb on + strandat 1067.904 kb on + strandat 1067.973 kb on + strandat 1067.973 kb on + strandat 1067.974 kb on - strandat 1067.974 kb on - strandat 1067.974 kb on - strandat 1068.004 kb on + strandat 1068.009 kb on + strandat 1068.010 kb on - strandat 1068.012 kb on + strandat 1068.012 kb on + strandat 1068.012 kb on + strandat 1068.037 kb on + strandat 1068.056 kb on + strandat 1068.058 kb on + strandat 1068.059 kb on - strandat 1068.092 kb on + strandat 1068.093 kb on - strandat 1068.093 kb on - strandat 1068.123 kb on + strandat 1068.125 kb on + strandat 1068.129 kb on + strandat 1068.130 kb on - strandat 1068.238 kb on + strandat 1068.327 kb on + strandat 1068.328 kb on - strandat 1068.328 kb on - strandat 1068.328 kb on - strandat 1068.336 kb on - strandat 1068.336 kb on - strandat 1068.336 kb on - strandat 1068.339 kb on - strandat 1068.339 kb on - strandat 1068.353 kb on + strandat 1068.353 kb on + strandat 1068.353 kb on + strandat 1068.354 kb on - strandat 1068.438 kb on + strandat 1068.438 kb on + strandat 1068.438 kb on + strandat 1068.438 kb on + strandat 1068.438 kb on + strandat 1068.502 kb on + strand, within Pf6N2E2_910at 1068.541 kb on + strand, within Pf6N2E2_910

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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1,066,050 + Pf6N2E2_908 0.72 -0.5
1,066,050 + Pf6N2E2_908 0.72 +0.5
1,066,051 - Pf6N2E2_908 0.72 +0.4
1,066,087 - Pf6N2E2_908 0.73 -0.7
1,066,137 + Pf6N2E2_908 0.74 -0.9
1,066,227 + Pf6N2E2_908 0.77 -0.9
1,066,227 + Pf6N2E2_908 0.77 -1.0
1,066,270 + Pf6N2E2_908 0.78 -0.3
1,066,270 + Pf6N2E2_908 0.78 +0.1
1,066,271 - Pf6N2E2_908 0.78 +0.0
1,066,321 + Pf6N2E2_908 0.80 -1.0
1,066,391 + Pf6N2E2_908 0.82 -0.2
1,066,391 + Pf6N2E2_908 0.82 +0.1
1,066,391 + Pf6N2E2_908 0.82 -0.2
1,066,391 + Pf6N2E2_908 0.82 +0.0
1,066,391 + Pf6N2E2_908 0.82 +0.4
1,066,392 - Pf6N2E2_908 0.82 +0.3
1,066,430 - Pf6N2E2_908 0.83 -1.2
1,066,451 + Pf6N2E2_908 0.83 +1.0
1,066,451 + Pf6N2E2_908 0.83 -0.7
1,066,452 - Pf6N2E2_908 0.83 -0.8
1,066,452 - Pf6N2E2_908 0.83 +0.6
1,066,505 - Pf6N2E2_908 0.85 +0.2
1,066,521 + Pf6N2E2_908 0.85 +0.0
1,066,557 - Pf6N2E2_908 0.86 +0.8
1,066,557 - Pf6N2E2_908 0.86 -1.3
1,066,557 - Pf6N2E2_908 0.86 -0.1
1,066,560 + Pf6N2E2_908 0.86 -0.9
1,066,561 - Pf6N2E2_908 0.87 +0.7
1,066,579 + Pf6N2E2_908 0.87 +1.1
1,066,579 + Pf6N2E2_908 0.87 -0.6
1,066,594 + Pf6N2E2_908 0.87 +0.1
1,066,645 + Pf6N2E2_908 0.89 -0.9
1,066,840 + +1.4
1,066,862 + -0.1
1,066,862 + -0.2
1,066,863 - -0.5
1,067,052 + -1.3
1,067,052 + +0.6
1,067,052 + +1.1
1,067,052 + +0.1
1,067,053 - +0.7
1,067,111 + Pf6N2E2_909 0.15 +0.2
1,067,111 + Pf6N2E2_909 0.15 +0.8
1,067,247 - Pf6N2E2_909 0.39 +0.7
1,067,291 + Pf6N2E2_909 0.46 +1.2
1,067,291 + Pf6N2E2_909 0.46 +0.2
1,067,292 - Pf6N2E2_909 0.47 -0.7
1,067,327 + Pf6N2E2_909 0.53 +0.1
1,067,380 + Pf6N2E2_909 0.62 +0.8
1,067,462 - Pf6N2E2_909 0.76 +2.2
1,067,464 + Pf6N2E2_909 0.76 +0.1
1,067,465 - Pf6N2E2_909 0.77 +0.3
1,067,465 - Pf6N2E2_909 0.77 +0.3
1,067,512 + Pf6N2E2_909 0.85 +0.2
1,067,513 - Pf6N2E2_909 0.85 +1.1
1,067,618 - -0.3
1,067,739 + +0.3
1,067,739 + +0.2
1,067,739 + -0.3
1,067,740 - +1.6
1,067,740 - -1.0
1,067,740 - +0.2
1,067,844 + -1.7
1,067,844 + +0.5
1,067,874 - -0.3
1,067,891 + +0.2
1,067,904 + +1.0
1,067,904 + +1.1
1,067,973 + -2.1
1,067,973 + -0.1
1,067,974 - +0.1
1,067,974 - -0.7
1,067,974 - -1.3
1,068,004 + -0.4
1,068,009 + -0.3
1,068,010 - -3.3
1,068,012 + +1.3
1,068,012 + +0.2
1,068,012 + +0.7
1,068,037 + -0.8
1,068,056 + +0.5
1,068,058 + +0.2
1,068,059 - -0.5
1,068,092 + -0.4
1,068,093 - -1.6
1,068,093 - -0.7
1,068,123 + -0.1
1,068,125 + -1.5
1,068,129 + -1.5
1,068,130 - +0.0
1,068,238 + +2.3
1,068,327 + +0.2
1,068,328 - +0.2
1,068,328 - -0.6
1,068,328 - +0.9
1,068,336 - -1.3
1,068,336 - +0.5
1,068,336 - -0.6
1,068,339 - -0.3
1,068,339 - +0.9
1,068,353 + +1.1
1,068,353 + -0.7
1,068,353 + +0.2
1,068,354 - -0.7
1,068,438 + -1.3
1,068,438 + -0.7
1,068,438 + +1.0
1,068,438 + +0.1
1,068,438 + +0.4
1,068,502 + Pf6N2E2_910 0.11 +0.4
1,068,541 + Pf6N2E2_910 0.13 +1.2

Or see this region's nucleotide sequence