Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6079

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6078 and Pf6N2E2_6079 are separated by 9 nucleotidesPf6N2E2_6079 and Pf6N2E2_6080 are separated by 32 nucleotidesPf6N2E2_6080 and Pf6N2E2_6081 are separated by 90 nucleotides Pf6N2E2_6078 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 6,897,599 to 6,899,407 _6078 Pf6N2E2_6079 - 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,899,417 to 6,900,007 _6079 Pf6N2E2_6080 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 6,900,040 to 6,900,768 _6080 Pf6N2E2_6081 - Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,900,859 to 6,901,428 _6081 Position (kb) 6899 6900 6901Strain fitness (log2 ratio) -2 -1 0 1 2at 6898.821 kb on - strand, within Pf6N2E2_6078at 6899.009 kb on + strand, within Pf6N2E2_6078at 6899.009 kb on + strand, within Pf6N2E2_6078at 6899.040 kb on - strand, within Pf6N2E2_6078at 6899.078 kb on + strand, within Pf6N2E2_6078at 6899.147 kb on + strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.410 kb on + strandat 6899.410 kb on + strandat 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.823 kb on + strand, within Pf6N2E2_6079at 6899.823 kb on + strand, within Pf6N2E2_6079at 6899.824 kb on - strand, within Pf6N2E2_6079at 6899.888 kb on + strand, within Pf6N2E2_6079at 6899.958 kb on + strandat 6899.985 kb on + strandat 6900.041 kb on + strandat 6900.042 kb on - strandat 6900.110 kb on + strandat 6900.110 kb on + strandat 6900.110 kb on + strandat 6900.116 kb on + strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.171 kb on - strand, within Pf6N2E2_6080at 6900.171 kb on - strand, within Pf6N2E2_6080at 6900.243 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.749 kb on - strandat 6901.000 kb on + strand, within Pf6N2E2_6081

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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6,898,821 - Pf6N2E2_6078 0.68 +0.0
6,899,009 + Pf6N2E2_6078 0.78 +0.2
6,899,009 + Pf6N2E2_6078 0.78 -0.2
6,899,040 - Pf6N2E2_6078 0.80 +0.4
6,899,078 + Pf6N2E2_6078 0.82 -0.1
6,899,147 + Pf6N2E2_6078 0.86 -0.2
6,899,148 - Pf6N2E2_6078 0.86 +1.1
6,899,148 - Pf6N2E2_6078 0.86 +0.0
6,899,148 - Pf6N2E2_6078 0.86 +0.5
6,899,148 - Pf6N2E2_6078 0.86 +0.3
6,899,410 + -1.3
6,899,410 + -0.4
6,899,580 + Pf6N2E2_6079 0.28 +1.4
6,899,580 + Pf6N2E2_6079 0.28 +0.5
6,899,580 + Pf6N2E2_6079 0.28 +1.2
6,899,580 + Pf6N2E2_6079 0.28 +0.5
6,899,581 - Pf6N2E2_6079 0.28 +0.2
6,899,581 - Pf6N2E2_6079 0.28 +0.6
6,899,581 - Pf6N2E2_6079 0.28 +1.7
6,899,581 - Pf6N2E2_6079 0.28 +0.0
6,899,581 - Pf6N2E2_6079 0.28 +0.4
6,899,581 - Pf6N2E2_6079 0.28 +0.5
6,899,581 - Pf6N2E2_6079 0.28 +0.6
6,899,746 + Pf6N2E2_6079 0.56 -0.4
6,899,746 + Pf6N2E2_6079 0.56 -1.1
6,899,746 + Pf6N2E2_6079 0.56 +0.9
6,899,746 + Pf6N2E2_6079 0.56 +0.1
6,899,747 - Pf6N2E2_6079 0.56 -0.1
6,899,747 - Pf6N2E2_6079 0.56 +1.5
6,899,747 - Pf6N2E2_6079 0.56 +1.3
6,899,747 - Pf6N2E2_6079 0.56 +0.9
6,899,823 + Pf6N2E2_6079 0.69 -0.1
6,899,823 + Pf6N2E2_6079 0.69 +2.2
6,899,824 - Pf6N2E2_6079 0.69 -0.3
6,899,888 + Pf6N2E2_6079 0.80 +0.4
6,899,958 + +0.3
6,899,985 + -0.8
6,900,041 + +0.5
6,900,042 - -0.3
6,900,110 + +1.1
6,900,110 + +0.3
6,900,110 + +0.2
6,900,116 + Pf6N2E2_6080 0.10 -0.3
6,900,117 - Pf6N2E2_6080 0.11 -0.1
6,900,117 - Pf6N2E2_6080 0.11 -0.7
6,900,117 - Pf6N2E2_6080 0.11 -0.8
6,900,117 - Pf6N2E2_6080 0.11 +2.7
6,900,171 - Pf6N2E2_6080 0.18 -0.1
6,900,171 - Pf6N2E2_6080 0.18 +0.3
6,900,243 + Pf6N2E2_6080 0.28 -2.7
6,900,455 + Pf6N2E2_6080 0.57 -0.8
6,900,455 + Pf6N2E2_6080 0.57 -0.9
6,900,455 + Pf6N2E2_6080 0.57 +0.2
6,900,749 - -0.1
6,901,000 + Pf6N2E2_6081 0.25 +0.5

Or see this region's nucleotide sequence