Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6029 and Pf6N2E2_6030 overlap by 10 nucleotides Pf6N2E2_6030 and Pf6N2E2_6031 are separated by 185 nucleotides Pf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotides Pf6N2E2_6032 and Pf6N2E2_6033 are separated by 88 nucleotides
Pf6N2E2_6029 - hypothetical protein, at 6,846,836 to 6,847,201
_6029
Pf6N2E2_6030 - Diaminopimelate epimerase (EC 5.1.1.7), at 6,847,192 to 6,847,995
_6030
Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705
_6031
Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340
_6032
Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526
_6033
Position (kb)
6848
6849 Strain fitness (log2 ratio)
-1
0
1
2 at 6847.510 kb on - strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.655 kb on - strand, within Pf6N2E2_6030 at 6847.773 kb on + strand, within Pf6N2E2_6030 at 6847.774 kb on - strand, within Pf6N2E2_6030 at 6848.083 kb on + strand at 6848.192 kb on + strand at 6848.193 kb on - strand at 6848.274 kb on - strand, within Pf6N2E2_6031 at 6848.317 kb on + strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.369 kb on - strand, within Pf6N2E2_6031 at 6848.369 kb on - strand, within Pf6N2E2_6031 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.741 kb on + strand at 6848.741 kb on + strand at 6848.742 kb on - strand at 6848.742 kb on - strand at 6848.820 kb on + strand at 6848.820 kb on + strand at 6848.821 kb on - strand at 6848.821 kb on - strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.893 kb on + strand at 6848.893 kb on + strand at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6849.037 kb on + strand, within Pf6N2E2_6032 at 6849.038 kb on - strand, within Pf6N2E2_6032 at 6849.038 kb on - strand, within Pf6N2E2_6032 at 6849.187 kb on - strand, within Pf6N2E2_6032 at 6849.278 kb on - strand, within Pf6N2E2_6032 at 6849.278 kb on - strand, within Pf6N2E2_6032 at 6849.283 kb on + strand, within Pf6N2E2_6032 at 6849.283 kb on + strand, within Pf6N2E2_6032 at 6849.313 kb on + strand at 6849.313 kb on + strand at 6849.313 kb on + strand at 6849.394 kb on + strand at 6849.450 kb on + strand at 6849.450 kb on + strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.552 kb on + strand, within Pf6N2E2_6033 at 6849.553 kb on - strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 6,847,510 - Pf6N2E2_6030 0.40 -0.4 6,847,654 + Pf6N2E2_6030 0.57 +0.5 6,847,654 + Pf6N2E2_6030 0.57 +0.1 6,847,654 + Pf6N2E2_6030 0.57 +0.4 6,847,655 - Pf6N2E2_6030 0.58 +0.4 6,847,773 + Pf6N2E2_6030 0.72 -0.1 6,847,774 - Pf6N2E2_6030 0.72 +0.3 6,848,083 + +0.0 6,848,192 + -0.7 6,848,193 - -0.5 6,848,274 - Pf6N2E2_6031 0.18 +1.3 6,848,317 + Pf6N2E2_6031 0.26 -1.5 6,848,318 - Pf6N2E2_6031 0.26 +0.9 6,848,318 - Pf6N2E2_6031 0.26 -0.0 6,848,318 - Pf6N2E2_6031 0.26 +0.9 6,848,369 - Pf6N2E2_6031 0.36 +0.4 6,848,369 - Pf6N2E2_6031 0.36 -1.3 6,848,551 + Pf6N2E2_6031 0.70 +0.9 6,848,551 + Pf6N2E2_6031 0.70 +1.8 6,848,741 + -0.2 6,848,741 + -0.6 6,848,742 - +0.9 6,848,742 - +1.1 6,848,820 + -0.0 6,848,820 + -0.2 6,848,821 - +0.0 6,848,821 - +0.6 6,848,824 + +0.5 6,848,824 + +1.3 6,848,824 + +0.1 6,848,824 + +0.1 6,848,824 + +1.0 6,848,824 + +0.3 6,848,824 + -0.4 6,848,824 + +0.1 6,848,824 + +0.6 6,848,824 + +1.1 6,848,825 - +0.3 6,848,825 - +1.9 6,848,825 - +0.2 6,848,825 - +0.1 6,848,825 - -0.2 6,848,825 - -0.3 6,848,825 - +0.0 6,848,825 - -1.0 6,848,825 - +0.0 6,848,825 - -0.3 6,848,825 - -0.3 6,848,847 + +0.2 6,848,847 + +1.4 6,848,847 + +0.3 6,848,893 + +1.0 6,848,893 + +1.3 6,848,926 + Pf6N2E2_6032 0.12 -0.2 6,848,926 + Pf6N2E2_6032 0.12 +0.5 6,848,926 + Pf6N2E2_6032 0.12 +0.2 6,848,927 - Pf6N2E2_6032 0.13 -0.0 6,848,927 - Pf6N2E2_6032 0.13 +1.1 6,848,927 - Pf6N2E2_6032 0.13 +0.0 6,849,037 + Pf6N2E2_6032 0.36 +0.4 6,849,038 - Pf6N2E2_6032 0.36 +1.1 6,849,038 - Pf6N2E2_6032 0.36 +0.2 6,849,187 - Pf6N2E2_6032 0.68 +0.4 6,849,278 - Pf6N2E2_6032 0.87 +0.6 6,849,278 - Pf6N2E2_6032 0.87 +0.5 6,849,283 + Pf6N2E2_6032 0.88 +0.4 6,849,283 + Pf6N2E2_6032 0.88 -0.6 6,849,313 + -1.0 6,849,313 + +1.0 6,849,313 + +0.4 6,849,394 + +0.3 6,849,450 + +0.6 6,849,450 + +0.6 6,849,451 - +1.7 6,849,451 - +0.0 6,849,451 - +0.9 6,849,451 - -0.3 6,849,552 + Pf6N2E2_6033 0.11 -1.4 6,849,553 - Pf6N2E2_6033 0.11 +0.0 6,849,678 + Pf6N2E2_6033 0.23 +0.9 6,849,678 + Pf6N2E2_6033 0.23 +1.3 6,849,678 + Pf6N2E2_6033 0.23 +0.8 6,849,678 + Pf6N2E2_6033 0.23 -1.0 6,849,681 + Pf6N2E2_6033 0.23 +0.2 6,849,681 + Pf6N2E2_6033 0.23 +1.0
Or see this region's nucleotide sequence