Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5710

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5708 and Pf6N2E2_5709 are separated by 49 nucleotidesPf6N2E2_5709 and Pf6N2E2_5710 are separated by 172 nucleotidesPf6N2E2_5710 and Pf6N2E2_5711 are separated by 416 nucleotides Pf6N2E2_5708 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 6,524,888 to 6,526,069 _5708 Pf6N2E2_5709 - Protein sprT, at 6,526,119 to 6,526,613 _5709 Pf6N2E2_5710 - probable membrane protein YPO2362, at 6,526,786 to 6,527,388 _5710 Pf6N2E2_5711 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 6,527,805 to 6,528,629 _5711 Position (kb) 6526 6527 6528Strain fitness (log2 ratio) -2 -1 0 1 2at 6525.861 kb on + strand, within Pf6N2E2_5708at 6525.861 kb on + strand, within Pf6N2E2_5708at 6525.862 kb on - strand, within Pf6N2E2_5708at 6525.967 kb on + strandat 6526.021 kb on + strandat 6526.022 kb on - strandat 6526.022 kb on - strandat 6526.067 kb on + strandat 6526.067 kb on + strandat 6526.068 kb on - strandat 6526.068 kb on - strandat 6526.120 kb on + strandat 6526.120 kb on + strandat 6526.121 kb on - strandat 6526.154 kb on + strandat 6526.154 kb on + strandat 6526.154 kb on + strandat 6526.155 kb on - strandat 6526.155 kb on - strandat 6526.155 kb on - strandat 6526.155 kb on - strandat 6526.177 kb on + strand, within Pf6N2E2_5709at 6526.177 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.252 kb on + strand, within Pf6N2E2_5709at 6526.253 kb on - strand, within Pf6N2E2_5709at 6526.253 kb on - strand, within Pf6N2E2_5709at 6526.253 kb on - strand, within Pf6N2E2_5709at 6526.253 kb on - strand, within Pf6N2E2_5709at 6526.259 kb on - strand, within Pf6N2E2_5709at 6526.311 kb on + strand, within Pf6N2E2_5709at 6526.311 kb on + strand, within Pf6N2E2_5709at 6526.312 kb on - strand, within Pf6N2E2_5709at 6526.318 kb on + strand, within Pf6N2E2_5709at 6526.319 kb on - strand, within Pf6N2E2_5709at 6526.319 kb on - strand, within Pf6N2E2_5709at 6526.576 kb on + strandat 6526.641 kb on - strandat 6526.762 kb on + strandat 6526.763 kb on - strandat 6526.763 kb on - strandat 6526.794 kb on + strandat 6526.796 kb on + strandat 6526.796 kb on + strandat 6526.797 kb on - strandat 6526.797 kb on - strandat 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.940 kb on + strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.941 kb on - strand, within Pf6N2E2_5710at 6526.949 kb on + strand, within Pf6N2E2_5710at 6526.949 kb on + strand, within Pf6N2E2_5710at 6526.950 kb on - strand, within Pf6N2E2_5710at 6526.950 kb on - strand, within Pf6N2E2_5710at 6526.950 kb on - strand, within Pf6N2E2_5710at 6526.959 kb on - strand, within Pf6N2E2_5710at 6527.048 kb on + strand, within Pf6N2E2_5710at 6527.048 kb on + strandat 6527.048 kb on + strand, within Pf6N2E2_5710at 6527.049 kb on - strand, within Pf6N2E2_5710at 6527.049 kb on - strand, within Pf6N2E2_5710at 6527.049 kb on - strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.093 kb on + strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.094 kb on - strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.297 kb on + strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.298 kb on - strand, within Pf6N2E2_5710at 6527.388 kb on + strandat 6527.388 kb on + strandat 6527.389 kb on - strandat 6527.458 kb on + strandat 6527.458 kb on + strandat 6527.458 kb on + strandat 6527.458 kb on + strandat 6527.458 kb on + strandat 6527.459 kb on - strandat 6527.459 kb on - strandat 6527.459 kb on - strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.468 kb on + strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.469 kb on - strandat 6527.547 kb on + strandat 6527.584 kb on + strandat 6527.585 kb on - strandat 6527.676 kb on + strandat 6527.676 kb on + strandat 6527.676 kb on + strandat 6527.676 kb on + strandat 6527.676 kb on + strandat 6527.677 kb on - strandat 6527.677 kb on - strandat 6527.677 kb on - strandat 6527.677 kb on - strandat 6527.680 kb on + strandat 6527.680 kb on + strandat 6527.680 kb on + strandat 6527.680 kb on + strandat 6527.680 kb on + strandat 6527.680 kb on + strandat 6527.681 kb on - strandat 6527.681 kb on - strandat 6527.681 kb on - strandat 6527.765 kb on - strandat 6527.816 kb on + strandat 6527.817 kb on - strandat 6527.817 kb on - strandat 6527.940 kb on + strand, within Pf6N2E2_5711at 6527.940 kb on + strand, within Pf6N2E2_5711at 6527.941 kb on - strand, within Pf6N2E2_5711at 6527.941 kb on - strand, within Pf6N2E2_5711at 6527.941 kb on - strand, within Pf6N2E2_5711at 6527.941 kb on - strand, within Pf6N2E2_5711at 6528.057 kb on + strand, within Pf6N2E2_5711at 6528.106 kb on - strand, within Pf6N2E2_5711at 6528.106 kb on - strand, within Pf6N2E2_5711at 6528.183 kb on + strand, within Pf6N2E2_5711at 6528.184 kb on - strand, within Pf6N2E2_5711at 6528.184 kb on - strand, within Pf6N2E2_5711at 6528.184 kb on - strand, within Pf6N2E2_5711at 6528.184 kb on - strand, within Pf6N2E2_5711at 6528.273 kb on + strand, within Pf6N2E2_5711at 6528.274 kb on - strand, within Pf6N2E2_5711at 6528.351 kb on + strand, within Pf6N2E2_5711at 6528.352 kb on - strand, within Pf6N2E2_5711at 6528.352 kb on - strand, within Pf6N2E2_5711at 6528.379 kb on - strand, within Pf6N2E2_5711at 6528.379 kb on - strand, within Pf6N2E2_5711

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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6,525,861 + Pf6N2E2_5708 0.82 +0.0
6,525,861 + Pf6N2E2_5708 0.82 -1.6
6,525,862 - Pf6N2E2_5708 0.82 +1.1
6,525,967 + +0.2
6,526,021 + +1.6
6,526,022 - +0.5
6,526,022 - -1.4
6,526,067 + +1.1
6,526,067 + +0.3
6,526,068 - +0.4
6,526,068 - -1.3
6,526,120 + -0.4
6,526,120 + -0.6
6,526,121 - +0.1
6,526,154 + +0.3
6,526,154 + -0.8
6,526,154 + -1.3
6,526,155 - -0.5
6,526,155 - -0.4
6,526,155 - +1.4
6,526,155 - +1.3
6,526,177 + Pf6N2E2_5709 0.12 +0.7
6,526,177 + Pf6N2E2_5709 0.12 -0.5
6,526,252 + Pf6N2E2_5709 0.27 +0.4
6,526,252 + Pf6N2E2_5709 0.27 -1.5
6,526,252 + Pf6N2E2_5709 0.27 +0.6
6,526,252 + Pf6N2E2_5709 0.27 +0.3
6,526,252 + Pf6N2E2_5709 0.27 +0.1
6,526,252 + Pf6N2E2_5709 0.27 -0.1
6,526,253 - Pf6N2E2_5709 0.27 +1.4
6,526,253 - Pf6N2E2_5709 0.27 -0.7
6,526,253 - Pf6N2E2_5709 0.27 -1.1
6,526,253 - Pf6N2E2_5709 0.27 +0.7
6,526,259 - Pf6N2E2_5709 0.28 +0.4
6,526,311 + Pf6N2E2_5709 0.39 +0.5
6,526,311 + Pf6N2E2_5709 0.39 -0.7
6,526,312 - Pf6N2E2_5709 0.39 -0.7
6,526,318 + Pf6N2E2_5709 0.40 +2.2
6,526,319 - Pf6N2E2_5709 0.40 -0.5
6,526,319 - Pf6N2E2_5709 0.40 +0.1
6,526,576 + +0.6
6,526,641 - -2.1
6,526,762 + -0.8
6,526,763 - -0.1
6,526,763 - +0.4
6,526,794 + +0.6
6,526,796 + -0.9
6,526,796 + +0.3
6,526,797 - -0.3
6,526,797 - -0.2
6,526,940 + Pf6N2E2_5710 0.26 -0.2
6,526,940 + Pf6N2E2_5710 0.26 +0.5
6,526,940 + Pf6N2E2_5710 0.26 +1.2
6,526,940 + Pf6N2E2_5710 0.26 +0.1
6,526,940 + Pf6N2E2_5710 0.26 +0.5
6,526,940 + Pf6N2E2_5710 0.26 -1.1
6,526,941 - Pf6N2E2_5710 0.26 +0.3
6,526,941 - Pf6N2E2_5710 0.26 +1.0
6,526,941 - Pf6N2E2_5710 0.26 +0.2
6,526,941 - Pf6N2E2_5710 0.26 -0.7
6,526,941 - Pf6N2E2_5710 0.26 -0.8
6,526,941 - Pf6N2E2_5710 0.26 +0.4
6,526,941 - Pf6N2E2_5710 0.26 +0.7
6,526,941 - Pf6N2E2_5710 0.26 +0.5
6,526,941 - Pf6N2E2_5710 0.26 +0.6
6,526,949 + Pf6N2E2_5710 0.27 -0.3
6,526,949 + Pf6N2E2_5710 0.27 -0.6
6,526,950 - Pf6N2E2_5710 0.27 -0.4
6,526,950 - Pf6N2E2_5710 0.27 -0.1
6,526,950 - Pf6N2E2_5710 0.27 +0.5
6,526,959 - Pf6N2E2_5710 0.29 +0.0
6,527,048 + Pf6N2E2_5710 0.43 +0.3
6,527,048 + +2.0
6,527,048 + Pf6N2E2_5710 0.43 +1.3
6,527,049 - Pf6N2E2_5710 0.44 -0.3
6,527,049 - Pf6N2E2_5710 0.44 +1.2
6,527,049 - Pf6N2E2_5710 0.44 +0.1
6,527,093 + Pf6N2E2_5710 0.51 +1.1
6,527,093 + Pf6N2E2_5710 0.51 -0.7
6,527,093 + Pf6N2E2_5710 0.51 +0.6
6,527,093 + Pf6N2E2_5710 0.51 -0.0
6,527,093 + Pf6N2E2_5710 0.51 -0.4
6,527,093 + Pf6N2E2_5710 0.51 -0.3
6,527,094 - Pf6N2E2_5710 0.51 +1.2
6,527,094 - Pf6N2E2_5710 0.51 +1.0
6,527,094 - Pf6N2E2_5710 0.51 -0.8
6,527,094 - Pf6N2E2_5710 0.51 -0.1
6,527,094 - Pf6N2E2_5710 0.51 +0.3
6,527,094 - Pf6N2E2_5710 0.51 +0.8
6,527,094 - Pf6N2E2_5710 0.51 -0.1
6,527,297 + Pf6N2E2_5710 0.85 -0.3
6,527,297 + Pf6N2E2_5710 0.85 -0.3
6,527,297 + Pf6N2E2_5710 0.85 +0.2
6,527,297 + Pf6N2E2_5710 0.85 +0.4
6,527,297 + Pf6N2E2_5710 0.85 +0.6
6,527,297 + Pf6N2E2_5710 0.85 -0.2
6,527,297 + Pf6N2E2_5710 0.85 +0.6
6,527,298 - Pf6N2E2_5710 0.85 -0.6
6,527,298 - Pf6N2E2_5710 0.85 +1.1
6,527,298 - Pf6N2E2_5710 0.85 +0.2
6,527,298 - Pf6N2E2_5710 0.85 +0.4
6,527,298 - Pf6N2E2_5710 0.85 +0.3
6,527,298 - Pf6N2E2_5710 0.85 +0.6
6,527,388 + -0.7
6,527,388 + -0.4
6,527,389 - +0.8
6,527,458 + +0.7
6,527,458 + +0.2
6,527,458 + -0.1
6,527,458 + +0.2
6,527,458 + -0.5
6,527,459 - -1.0
6,527,459 - -0.4
6,527,459 - -0.7
6,527,468 + +0.1
6,527,468 + +0.4
6,527,468 + -0.7
6,527,468 + +0.5
6,527,468 + +1.6
6,527,468 + +0.2
6,527,468 + -0.1
6,527,469 - +0.9
6,527,469 - -0.5
6,527,469 - +0.1
6,527,469 - -0.1
6,527,469 - -0.1
6,527,469 - +0.4
6,527,469 - -0.1
6,527,547 + +0.0
6,527,584 + +2.3
6,527,585 - +1.0
6,527,676 + +0.6
6,527,676 + +0.6
6,527,676 + +1.4
6,527,676 + +0.2
6,527,676 + -0.4
6,527,677 - -0.9
6,527,677 - +2.2
6,527,677 - +0.0
6,527,677 - -0.1
6,527,680 + -2.6
6,527,680 + -0.5
6,527,680 + +0.1
6,527,680 + -0.1
6,527,680 + -0.1
6,527,680 + -0.1
6,527,681 - -0.9
6,527,681 - -0.7
6,527,681 - -0.3
6,527,765 - +0.5
6,527,816 + +0.9
6,527,817 - -0.8
6,527,817 - +0.8
6,527,940 + Pf6N2E2_5711 0.16 -0.6
6,527,940 + Pf6N2E2_5711 0.16 +0.5
6,527,941 - Pf6N2E2_5711 0.16 -0.0
6,527,941 - Pf6N2E2_5711 0.16 +0.3
6,527,941 - Pf6N2E2_5711 0.16 +0.1
6,527,941 - Pf6N2E2_5711 0.16 -0.7
6,528,057 + Pf6N2E2_5711 0.31 +1.0
6,528,106 - Pf6N2E2_5711 0.36 +1.3
6,528,106 - Pf6N2E2_5711 0.36 -0.1
6,528,183 + Pf6N2E2_5711 0.46 +0.8
6,528,184 - Pf6N2E2_5711 0.46 +0.5
6,528,184 - Pf6N2E2_5711 0.46 -0.9
6,528,184 - Pf6N2E2_5711 0.46 +1.7
6,528,184 - Pf6N2E2_5711 0.46 +0.3
6,528,273 + Pf6N2E2_5711 0.57 +0.1
6,528,274 - Pf6N2E2_5711 0.57 +1.7
6,528,351 + Pf6N2E2_5711 0.66 -0.3
6,528,352 - Pf6N2E2_5711 0.66 -0.3
6,528,352 - Pf6N2E2_5711 0.66 -0.8
6,528,379 - Pf6N2E2_5711 0.70 -0.3
6,528,379 - Pf6N2E2_5711 0.70 -0.4

Or see this region's nucleotide sequence