Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4568 and Pf6N2E2_4569 are separated by 30 nucleotides Pf6N2E2_4569 and Pf6N2E2_4570 are separated by 52 nucleotides Pf6N2E2_4570 and Pf6N2E2_4571 are separated by 162 nucleotides Pf6N2E2_4571 and Pf6N2E2_4572 are separated by 137 nucleotides
Pf6N2E2_4568 - Predicted signal transduction protein, at 5,299,579 to 5,300,448
_4568
Pf6N2E2_4569 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 5,300,479 to 5,301,291
_4569
Pf6N2E2_4570 - Cation/multidrug efflux pump, at 5,301,344 to 5,301,664
_4570
Pf6N2E2_4571 - 4Fe-4S ferredoxin, iron-sulfur binding, at 5,301,827 to 5,302,078
_4571
Pf6N2E2_4572 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 5,302,216 to 5,302,695
_4572
Position (kb)
5301
5302 Strain fitness (log2 ratio)
-1
0
1
2 at 5300.380 kb on + strand at 5300.380 kb on + strand at 5300.398 kb on + strand at 5300.653 kb on + strand, within Pf6N2E2_4569 at 5300.653 kb on + strand, within Pf6N2E2_4569 at 5300.654 kb on - strand, within Pf6N2E2_4569 at 5300.654 kb on - strand, within Pf6N2E2_4569 at 5300.795 kb on - strand, within Pf6N2E2_4569 at 5300.988 kb on + strand, within Pf6N2E2_4569 at 5300.988 kb on + strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.989 kb on - strand, within Pf6N2E2_4569 at 5300.992 kb on + strand, within Pf6N2E2_4569 at 5300.992 kb on + strand, within Pf6N2E2_4569 at 5300.992 kb on + strand, within Pf6N2E2_4569 at 5300.992 kb on + strand, within Pf6N2E2_4569 at 5300.993 kb on - strand, within Pf6N2E2_4569 at 5301.167 kb on - strand, within Pf6N2E2_4569 at 5301.306 kb on + strand at 5301.306 kb on + strand at 5301.307 kb on - strand at 5301.307 kb on - strand at 5301.307 kb on - strand at 5301.307 kb on - strand at 5301.307 kb on - strand at 5301.308 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.315 kb on + strand at 5301.316 kb on - strand at 5301.316 kb on - strand at 5301.316 kb on - strand at 5301.318 kb on + strand at 5301.326 kb on + strand at 5301.327 kb on - strand at 5301.432 kb on - strand, within Pf6N2E2_4570 at 5301.531 kb on + strand, within Pf6N2E2_4570 at 5301.531 kb on + strand, within Pf6N2E2_4570 at 5301.635 kb on - strand at 5301.753 kb on + strand at 5301.753 kb on + strand at 5301.753 kb on + strand at 5301.754 kb on - strand at 5301.754 kb on - strand at 5301.754 kb on - strand at 5301.811 kb on + strand at 5301.812 kb on - strand at 5301.818 kb on + strand at 5301.818 kb on + strand at 5301.818 kb on + strand at 5301.819 kb on - strand at 5301.819 kb on - strand at 5301.819 kb on - strand at 5302.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 5,300,380 + -0.2 5,300,380 + -0.6 5,300,398 + -0.7 5,300,653 + Pf6N2E2_4569 0.21 -0.4 5,300,653 + Pf6N2E2_4569 0.21 -0.9 5,300,654 - Pf6N2E2_4569 0.22 -0.4 5,300,654 - Pf6N2E2_4569 0.22 -0.3 5,300,795 - Pf6N2E2_4569 0.39 +0.4 5,300,988 + Pf6N2E2_4569 0.63 -0.0 5,300,988 + Pf6N2E2_4569 0.63 -0.1 5,300,989 - Pf6N2E2_4569 0.63 +0.5 5,300,989 - Pf6N2E2_4569 0.63 +0.2 5,300,989 - Pf6N2E2_4569 0.63 +0.5 5,300,989 - Pf6N2E2_4569 0.63 +0.2 5,300,989 - Pf6N2E2_4569 0.63 +1.0 5,300,989 - Pf6N2E2_4569 0.63 +0.2 5,300,992 + Pf6N2E2_4569 0.63 +0.3 5,300,992 + Pf6N2E2_4569 0.63 +0.0 5,300,992 + Pf6N2E2_4569 0.63 -0.6 5,300,992 + Pf6N2E2_4569 0.63 +0.2 5,300,993 - Pf6N2E2_4569 0.63 +0.0 5,301,167 - Pf6N2E2_4569 0.85 -0.2 5,301,306 + +0.3 5,301,306 + -1.0 5,301,307 - +0.4 5,301,307 - +0.4 5,301,307 - +0.8 5,301,307 - +0.2 5,301,307 - +1.3 5,301,308 + +0.9 5,301,315 + -1.1 5,301,315 + +0.2 5,301,315 + -1.0 5,301,315 + -0.4 5,301,315 + -0.2 5,301,315 + -0.5 5,301,315 + -0.4 5,301,315 + +0.2 5,301,316 - -0.6 5,301,316 - +0.0 5,301,316 - -0.8 5,301,318 + +0.7 5,301,326 + -0.8 5,301,327 - -0.4 5,301,432 - Pf6N2E2_4570 0.27 +1.1 5,301,531 + Pf6N2E2_4570 0.58 +0.3 5,301,531 + Pf6N2E2_4570 0.58 +0.4 5,301,635 - +1.9 5,301,753 + +0.3 5,301,753 + -1.1 5,301,753 + -0.9 5,301,754 - -0.1 5,301,754 - +0.5 5,301,754 - -0.5 5,301,811 + -0.3 5,301,812 - +0.7 5,301,818 + +0.1 5,301,818 + +0.3 5,301,818 + -1.0 5,301,819 - +0.8 5,301,819 - +1.0 5,301,819 - +0.7 5,302,218 - -1.2
Or see this region's nucleotide sequence