Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4570

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4568 and Pf6N2E2_4569 are separated by 30 nucleotidesPf6N2E2_4569 and Pf6N2E2_4570 are separated by 52 nucleotidesPf6N2E2_4570 and Pf6N2E2_4571 are separated by 162 nucleotidesPf6N2E2_4571 and Pf6N2E2_4572 are separated by 137 nucleotides Pf6N2E2_4568 - Predicted signal transduction protein, at 5,299,579 to 5,300,448 _4568 Pf6N2E2_4569 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 5,300,479 to 5,301,291 _4569 Pf6N2E2_4570 - Cation/multidrug efflux pump, at 5,301,344 to 5,301,664 _4570 Pf6N2E2_4571 - 4Fe-4S ferredoxin, iron-sulfur binding, at 5,301,827 to 5,302,078 _4571 Pf6N2E2_4572 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 5,302,216 to 5,302,695 _4572 Position (kb) 5301 5302Strain fitness (log2 ratio) -1 0 1 2at 5300.380 kb on + strandat 5300.380 kb on + strandat 5300.398 kb on + strandat 5300.653 kb on + strand, within Pf6N2E2_4569at 5300.653 kb on + strand, within Pf6N2E2_4569at 5300.654 kb on - strand, within Pf6N2E2_4569at 5300.654 kb on - strand, within Pf6N2E2_4569at 5300.795 kb on - strand, within Pf6N2E2_4569at 5300.988 kb on + strand, within Pf6N2E2_4569at 5300.988 kb on + strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.989 kb on - strand, within Pf6N2E2_4569at 5300.992 kb on + strand, within Pf6N2E2_4569at 5300.992 kb on + strand, within Pf6N2E2_4569at 5300.992 kb on + strand, within Pf6N2E2_4569at 5300.992 kb on + strand, within Pf6N2E2_4569at 5300.993 kb on - strand, within Pf6N2E2_4569at 5301.167 kb on - strand, within Pf6N2E2_4569at 5301.306 kb on + strandat 5301.306 kb on + strandat 5301.307 kb on - strandat 5301.307 kb on - strandat 5301.307 kb on - strandat 5301.307 kb on - strandat 5301.307 kb on - strandat 5301.308 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.315 kb on + strandat 5301.316 kb on - strandat 5301.316 kb on - strandat 5301.316 kb on - strandat 5301.318 kb on + strandat 5301.326 kb on + strandat 5301.327 kb on - strandat 5301.432 kb on - strand, within Pf6N2E2_4570at 5301.531 kb on + strand, within Pf6N2E2_4570at 5301.531 kb on + strand, within Pf6N2E2_4570at 5301.635 kb on - strandat 5301.753 kb on + strandat 5301.753 kb on + strandat 5301.753 kb on + strandat 5301.754 kb on - strandat 5301.754 kb on - strandat 5301.754 kb on - strandat 5301.811 kb on + strandat 5301.812 kb on - strandat 5301.818 kb on + strandat 5301.818 kb on + strandat 5301.818 kb on + strandat 5301.819 kb on - strandat 5301.819 kb on - strandat 5301.819 kb on - strandat 5302.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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5,300,380 + -0.2
5,300,380 + -0.6
5,300,398 + -0.7
5,300,653 + Pf6N2E2_4569 0.21 -0.4
5,300,653 + Pf6N2E2_4569 0.21 -0.9
5,300,654 - Pf6N2E2_4569 0.22 -0.4
5,300,654 - Pf6N2E2_4569 0.22 -0.3
5,300,795 - Pf6N2E2_4569 0.39 +0.4
5,300,988 + Pf6N2E2_4569 0.63 -0.0
5,300,988 + Pf6N2E2_4569 0.63 -0.1
5,300,989 - Pf6N2E2_4569 0.63 +0.5
5,300,989 - Pf6N2E2_4569 0.63 +0.2
5,300,989 - Pf6N2E2_4569 0.63 +0.5
5,300,989 - Pf6N2E2_4569 0.63 +0.2
5,300,989 - Pf6N2E2_4569 0.63 +1.0
5,300,989 - Pf6N2E2_4569 0.63 +0.2
5,300,992 + Pf6N2E2_4569 0.63 +0.3
5,300,992 + Pf6N2E2_4569 0.63 +0.0
5,300,992 + Pf6N2E2_4569 0.63 -0.6
5,300,992 + Pf6N2E2_4569 0.63 +0.2
5,300,993 - Pf6N2E2_4569 0.63 +0.0
5,301,167 - Pf6N2E2_4569 0.85 -0.2
5,301,306 + +0.3
5,301,306 + -1.0
5,301,307 - +0.4
5,301,307 - +0.4
5,301,307 - +0.8
5,301,307 - +0.2
5,301,307 - +1.3
5,301,308 + +0.9
5,301,315 + -1.1
5,301,315 + +0.2
5,301,315 + -1.0
5,301,315 + -0.4
5,301,315 + -0.2
5,301,315 + -0.5
5,301,315 + -0.4
5,301,315 + +0.2
5,301,316 - -0.6
5,301,316 - +0.0
5,301,316 - -0.8
5,301,318 + +0.7
5,301,326 + -0.8
5,301,327 - -0.4
5,301,432 - Pf6N2E2_4570 0.27 +1.1
5,301,531 + Pf6N2E2_4570 0.58 +0.3
5,301,531 + Pf6N2E2_4570 0.58 +0.4
5,301,635 - +1.9
5,301,753 + +0.3
5,301,753 + -1.1
5,301,753 + -0.9
5,301,754 - -0.1
5,301,754 - +0.5
5,301,754 - -0.5
5,301,811 + -0.3
5,301,812 - +0.7
5,301,818 + +0.1
5,301,818 + +0.3
5,301,818 + -1.0
5,301,819 - +0.8
5,301,819 - +1.0
5,301,819 - +0.7
5,302,218 - -1.2

Or see this region's nucleotide sequence