Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4551

Experiment: Cerium(III) chloride 0.000195313 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4549 and Pf6N2E2_4550 are separated by 14 nucleotidesPf6N2E2_4550 and Pf6N2E2_4551 are separated by 52 nucleotidesPf6N2E2_4551 and Pf6N2E2_4552 are separated by 293 nucleotidesPf6N2E2_4552 and Pf6N2E2_4553 are separated by 93 nucleotides Pf6N2E2_4549 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 5,279,744 to 5,280,631 _4549 Pf6N2E2_4550 - hypothetical protein, at 5,280,646 to 5,281,020 _4550 Pf6N2E2_4551 - hypothetical protein, at 5,281,073 to 5,281,750 _4551 Pf6N2E2_4552 - hypothetical protein, at 5,282,044 to 5,282,253 _4552 Pf6N2E2_4553 - Nitrogen regulation protein NtrC, at 5,282,347 to 5,283,270 _4553 Position (kb) 5281 5282Strain fitness (log2 ratio) -1 0 1 2at 5280.172 kb on + strand, within Pf6N2E2_4549at 5280.172 kb on + strand, within Pf6N2E2_4549at 5280.173 kb on - strand, within Pf6N2E2_4549at 5280.181 kb on + strand, within Pf6N2E2_4549at 5280.272 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.312 kb on + strand, within Pf6N2E2_4549at 5280.313 kb on - strand, within Pf6N2E2_4549at 5280.313 kb on - strand, within Pf6N2E2_4549at 5280.313 kb on - strand, within Pf6N2E2_4549at 5280.313 kb on - strand, within Pf6N2E2_4549at 5280.319 kb on - strand, within Pf6N2E2_4549at 5280.648 kb on - strandat 5281.012 kb on + strandat 5281.012 kb on + strandat 5281.012 kb on + strandat 5281.012 kb on + strandat 5281.012 kb on + strandat 5281.012 kb on + strandat 5281.013 kb on - strandat 5281.013 kb on - strandat 5281.013 kb on - strandat 5281.013 kb on - strandat 5281.013 kb on - strandat 5281.668 kb on + strand, within Pf6N2E2_4551at 5281.668 kb on + strand, within Pf6N2E2_4551at 5281.669 kb on - strand, within Pf6N2E2_4551at 5281.669 kb on - strand, within Pf6N2E2_4551at 5281.739 kb on + strandat 5282.053 kb on + strandat 5282.053 kb on + strandat 5282.053 kb on + strandat 5282.053 kb on + strandat 5282.253 kb on + strandat 5282.254 kb on - strandat 5282.254 kb on - strandat 5282.259 kb on + strandat 5282.260 kb on - strandat 5282.260 kb on - strandat 5282.307 kb on + strandat 5282.359 kb on + strandat 5282.359 kb on + strandat 5282.384 kb on + strandat 5282.384 kb on + strandat 5282.385 kb on - strandat 5282.385 kb on - strandat 5282.385 kb on - strandat 5282.560 kb on + strand, within Pf6N2E2_4553at 5282.560 kb on + strand, within Pf6N2E2_4553at 5282.560 kb on + strand, within Pf6N2E2_4553at 5282.561 kb on - strand, within Pf6N2E2_4553at 5282.561 kb on - strand, within Pf6N2E2_4553at 5282.654 kb on + strand, within Pf6N2E2_4553

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
remove
5,280,172 + Pf6N2E2_4549 0.48 -0.9
5,280,172 + Pf6N2E2_4549 0.48 +0.6
5,280,173 - Pf6N2E2_4549 0.48 -0.7
5,280,181 + Pf6N2E2_4549 0.49 +0.8
5,280,272 + Pf6N2E2_4549 0.59 -0.2
5,280,312 + Pf6N2E2_4549 0.64 -0.5
5,280,312 + Pf6N2E2_4549 0.64 -0.1
5,280,312 + Pf6N2E2_4549 0.64 -0.9
5,280,312 + Pf6N2E2_4549 0.64 +0.3
5,280,312 + Pf6N2E2_4549 0.64 +0.0
5,280,312 + Pf6N2E2_4549 0.64 +0.1
5,280,312 + Pf6N2E2_4549 0.64 +0.7
5,280,312 + Pf6N2E2_4549 0.64 +0.3
5,280,313 - Pf6N2E2_4549 0.64 +1.1
5,280,313 - Pf6N2E2_4549 0.64 -0.1
5,280,313 - Pf6N2E2_4549 0.64 -0.5
5,280,313 - Pf6N2E2_4549 0.64 +0.3
5,280,319 - Pf6N2E2_4549 0.65 -1.1
5,280,648 - +0.3
5,281,012 + +2.1
5,281,012 + -1.4
5,281,012 + -0.4
5,281,012 + -0.2
5,281,012 + +0.9
5,281,012 + +0.1
5,281,013 - +0.5
5,281,013 - -0.1
5,281,013 - +1.2
5,281,013 - -0.2
5,281,013 - -1.0
5,281,668 + Pf6N2E2_4551 0.88 -0.4
5,281,668 + Pf6N2E2_4551 0.88 -1.1
5,281,669 - Pf6N2E2_4551 0.88 -0.4
5,281,669 - Pf6N2E2_4551 0.88 -0.5
5,281,739 + +0.6
5,282,053 + -0.4
5,282,053 + -0.8
5,282,053 + +0.5
5,282,053 + +0.1
5,282,253 + -0.8
5,282,254 - -1.3
5,282,254 - +0.1
5,282,259 + +0.3
5,282,260 - -0.4
5,282,260 - +0.6
5,282,307 + -1.1
5,282,359 + +0.1
5,282,359 + -0.0
5,282,384 + +0.5
5,282,384 + +1.9
5,282,385 - +0.2
5,282,385 - +0.4
5,282,385 - +0.4
5,282,560 + Pf6N2E2_4553 0.23 +0.5
5,282,560 + Pf6N2E2_4553 0.23 -0.1
5,282,560 + Pf6N2E2_4553 0.23 +0.5
5,282,561 - Pf6N2E2_4553 0.23 -0.7
5,282,561 - Pf6N2E2_4553 0.23 +0.4
5,282,654 + Pf6N2E2_4553 0.33 +0.0

Or see this region's nucleotide sequence