Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1842

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1840 and Pf6N2E2_1841 are separated by 10 nucleotidesPf6N2E2_1841 and Pf6N2E2_1842 are separated by 179 nucleotidesPf6N2E2_1842 and Pf6N2E2_1843 are separated by 429 nucleotides Pf6N2E2_1840 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,178,554 to 2,179,366 _1840 Pf6N2E2_1841 - hypothetical protein, at 2,179,377 to 2,179,526 _1841 Pf6N2E2_1842 - Transcriptional regulator, TetR family, at 2,179,706 to 2,180,350 _1842 Pf6N2E2_1843 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,180,780 to 2,181,541 _1843 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -2 -1 0 1at 2178.707 kb on - strand, within Pf6N2E2_1840at 2179.087 kb on - strand, within Pf6N2E2_1840at 2179.087 kb on - strand, within Pf6N2E2_1840at 2179.105 kb on + strand, within Pf6N2E2_1840at 2179.107 kb on + strand, within Pf6N2E2_1840at 2179.108 kb on - strand, within Pf6N2E2_1840at 2179.108 kb on - strand, within Pf6N2E2_1840at 2179.141 kb on + strand, within Pf6N2E2_1840at 2179.141 kb on + strand, within Pf6N2E2_1840at 2179.142 kb on - strand, within Pf6N2E2_1840at 2179.560 kb on + strandat 2179.566 kb on - strandat 2179.744 kb on + strandat 2179.773 kb on + strand, within Pf6N2E2_1842at 2179.773 kb on + strand, within Pf6N2E2_1842at 2179.774 kb on - strand, within Pf6N2E2_1842at 2179.774 kb on - strand, within Pf6N2E2_1842at 2179.996 kb on - strand, within Pf6N2E2_1842at 2180.171 kb on - strand, within Pf6N2E2_1842at 2180.171 kb on - strand, within Pf6N2E2_1842at 2180.178 kb on - strand, within Pf6N2E2_1842at 2180.224 kb on + strand, within Pf6N2E2_1842at 2180.224 kb on + strand, within Pf6N2E2_1842at 2180.225 kb on - strand, within Pf6N2E2_1842at 2180.225 kb on - strand, within Pf6N2E2_1842at 2180.241 kb on + strand, within Pf6N2E2_1842at 2180.360 kb on - strandat 2180.678 kb on + strandat 2180.937 kb on + strand, within Pf6N2E2_1843at 2181.173 kb on + strand, within Pf6N2E2_1843at 2181.174 kb on - strand, within Pf6N2E2_1843at 2181.206 kb on + strand, within Pf6N2E2_1843at 2181.206 kb on + strand, within Pf6N2E2_1843at 2181.206 kb on + strand, within Pf6N2E2_1843at 2181.207 kb on - strand, within Pf6N2E2_1843at 2181.207 kb on - strand, within Pf6N2E2_1843at 2181.207 kb on - strand, within Pf6N2E2_1843at 2181.207 kb on - strand, within Pf6N2E2_1843at 2181.219 kb on - strand, within Pf6N2E2_1843at 2181.249 kb on - strand, within Pf6N2E2_1843

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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2,178,707 - Pf6N2E2_1840 0.19 +0.1
2,179,087 - Pf6N2E2_1840 0.66 +0.1
2,179,087 - Pf6N2E2_1840 0.66 +0.7
2,179,105 + Pf6N2E2_1840 0.68 -0.4
2,179,107 + Pf6N2E2_1840 0.68 +0.9
2,179,108 - Pf6N2E2_1840 0.68 -0.5
2,179,108 - Pf6N2E2_1840 0.68 +0.5
2,179,141 + Pf6N2E2_1840 0.72 -0.3
2,179,141 + Pf6N2E2_1840 0.72 -0.1
2,179,142 - Pf6N2E2_1840 0.72 -1.2
2,179,560 + -0.1
2,179,566 - -0.3
2,179,744 + +0.0
2,179,773 + Pf6N2E2_1842 0.10 -2.3
2,179,773 + Pf6N2E2_1842 0.10 -0.1
2,179,774 - Pf6N2E2_1842 0.11 -1.0
2,179,774 - Pf6N2E2_1842 0.11 +0.2
2,179,996 - Pf6N2E2_1842 0.45 -2.2
2,180,171 - Pf6N2E2_1842 0.72 -0.1
2,180,171 - Pf6N2E2_1842 0.72 -0.4
2,180,178 - Pf6N2E2_1842 0.73 -1.4
2,180,224 + Pf6N2E2_1842 0.80 -0.5
2,180,224 + Pf6N2E2_1842 0.80 -0.6
2,180,225 - Pf6N2E2_1842 0.80 +0.6
2,180,225 - Pf6N2E2_1842 0.80 -0.2
2,180,241 + Pf6N2E2_1842 0.83 -1.2
2,180,360 - -0.9
2,180,678 + +0.6
2,180,937 + Pf6N2E2_1843 0.21 -0.1
2,181,173 + Pf6N2E2_1843 0.52 -0.1
2,181,174 - Pf6N2E2_1843 0.52 +0.4
2,181,206 + Pf6N2E2_1843 0.56 -0.6
2,181,206 + Pf6N2E2_1843 0.56 -1.1
2,181,206 + Pf6N2E2_1843 0.56 -0.3
2,181,207 - Pf6N2E2_1843 0.56 +0.6
2,181,207 - Pf6N2E2_1843 0.56 -0.3
2,181,207 - Pf6N2E2_1843 0.56 -1.1
2,181,207 - Pf6N2E2_1843 0.56 +0.4
2,181,219 - Pf6N2E2_1843 0.58 -0.1
2,181,249 - Pf6N2E2_1843 0.62 +0.4

Or see this region's nucleotide sequence