Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1750

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1749 and Pf6N2E2_1750 are separated by 162 nucleotidesPf6N2E2_1750 and Pf6N2E2_1751 are separated by 64 nucleotides Pf6N2E2_1749 - Cyn operon transcriptional activator, at 2,062,810 to 2,063,703 _1749 Pf6N2E2_1750 - Sigma-54 dependent transcriptional regulator, at 2,063,866 to 2,065,788 _1750 Pf6N2E2_1751 - Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21), at 2,065,853 to 2,067,286 _1751 Position (kb) 2063 2064 2065 2066Strain fitness (log2 ratio) -1 0 1at 2063.032 kb on - strand, within Pf6N2E2_1749at 2063.327 kb on - strand, within Pf6N2E2_1749at 2063.385 kb on - strand, within Pf6N2E2_1749at 2063.385 kb on - strand, within Pf6N2E2_1749at 2063.702 kb on - strandat 2063.702 kb on - strandat 2063.775 kb on + strandat 2063.776 kb on - strandat 2063.781 kb on - strandat 2063.811 kb on + strandat 2063.812 kb on - strandat 2063.852 kb on - strandat 2064.077 kb on - strand, within Pf6N2E2_1750at 2064.077 kb on - strand, within Pf6N2E2_1750at 2064.205 kb on + strand, within Pf6N2E2_1750at 2064.205 kb on + strand, within Pf6N2E2_1750at 2064.206 kb on - strand, within Pf6N2E2_1750at 2064.206 kb on - strand, within Pf6N2E2_1750at 2064.442 kb on + strand, within Pf6N2E2_1750at 2064.443 kb on - strand, within Pf6N2E2_1750at 2064.443 kb on - strand, within Pf6N2E2_1750at 2064.708 kb on - strand, within Pf6N2E2_1750at 2065.092 kb on + strand, within Pf6N2E2_1750at 2065.308 kb on + strand, within Pf6N2E2_1750at 2065.308 kb on + strand, within Pf6N2E2_1750at 2065.309 kb on - strand, within Pf6N2E2_1750at 2065.309 kb on - strand, within Pf6N2E2_1750at 2065.610 kb on - strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.867 kb on - strandat 2065.893 kb on + strandat 2065.985 kb on - strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2066.047 kb on - strand, within Pf6N2E2_1751at 2066.243 kb on - strand, within Pf6N2E2_1751at 2066.782 kb on + strand, within Pf6N2E2_1751

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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2,063,032 - Pf6N2E2_1749 0.25 -0.8
2,063,327 - Pf6N2E2_1749 0.58 -0.0
2,063,385 - Pf6N2E2_1749 0.64 -1.3
2,063,385 - Pf6N2E2_1749 0.64 +0.8
2,063,702 - +1.1
2,063,702 - -0.0
2,063,775 + +1.0
2,063,776 - +0.0
2,063,781 - +0.4
2,063,811 + +0.9
2,063,812 - +0.5
2,063,852 - -0.1
2,064,077 - Pf6N2E2_1750 0.11 +1.4
2,064,077 - Pf6N2E2_1750 0.11 +0.2
2,064,205 + Pf6N2E2_1750 0.18 +0.3
2,064,205 + Pf6N2E2_1750 0.18 +0.7
2,064,206 - Pf6N2E2_1750 0.18 +1.4
2,064,206 - Pf6N2E2_1750 0.18 +0.4
2,064,442 + Pf6N2E2_1750 0.30 +0.4
2,064,443 - Pf6N2E2_1750 0.30 -1.1
2,064,443 - Pf6N2E2_1750 0.30 -1.5
2,064,708 - Pf6N2E2_1750 0.44 -0.4
2,065,092 + Pf6N2E2_1750 0.64 -0.1
2,065,308 + Pf6N2E2_1750 0.75 -0.5
2,065,308 + Pf6N2E2_1750 0.75 +1.7
2,065,309 - Pf6N2E2_1750 0.75 +1.0
2,065,309 - Pf6N2E2_1750 0.75 +0.3
2,065,610 - +0.2
2,065,866 + -0.9
2,065,866 + +1.2
2,065,866 + -0.1
2,065,866 + -0.7
2,065,867 - -0.5
2,065,893 + +1.3
2,065,985 - +0.4
2,065,986 + -0.3
2,065,986 + +1.2
2,065,986 + +0.2
2,065,986 + +0.6
2,065,986 + +0.8
2,065,987 - +0.3
2,065,987 - +0.7
2,065,987 - +0.9
2,065,987 - +0.3
2,065,987 - +0.2
2,065,987 - -0.3
2,065,987 - +1.1
2,065,987 - +0.2
2,066,047 - Pf6N2E2_1751 0.14 -0.6
2,066,243 - Pf6N2E2_1751 0.27 -0.5
2,066,782 + Pf6N2E2_1751 0.65 -0.3

Or see this region's nucleotide sequence