Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1731

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1730 and Pf6N2E2_1731 are separated by 33 nucleotidesPf6N2E2_1731 and Pf6N2E2_1732 are separated by 345 nucleotidesPf6N2E2_1732 and Pf6N2E2_1733 are separated by 23 nucleotides Pf6N2E2_1730 - Quinone oxidoreductase (EC 1.6.5.5), at 2,042,533 to 2,043,507 _1730 Pf6N2E2_1731 - Transcriptional regulator, LysR family, at 2,043,541 to 2,044,464 _1731 Pf6N2E2_1732 - hypothetical protein, at 2,044,810 to 2,045,049 _1732 Pf6N2E2_1733 - Oligopeptide transporter, OPT family, at 2,045,073 to 2,046,818 _1733 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -1 0 1 2 3at 2042.649 kb on + strand, within Pf6N2E2_1730at 2042.656 kb on + strand, within Pf6N2E2_1730at 2042.657 kb on - strand, within Pf6N2E2_1730at 2042.657 kb on - strand, within Pf6N2E2_1730at 2042.788 kb on + strand, within Pf6N2E2_1730at 2042.788 kb on + strand, within Pf6N2E2_1730at 2042.789 kb on - strand, within Pf6N2E2_1730at 2042.917 kb on + strand, within Pf6N2E2_1730at 2042.918 kb on - strand, within Pf6N2E2_1730at 2042.918 kb on - strand, within Pf6N2E2_1730at 2042.935 kb on + strand, within Pf6N2E2_1730at 2042.935 kb on + strand, within Pf6N2E2_1730at 2042.935 kb on + strand, within Pf6N2E2_1730at 2042.936 kb on - strand, within Pf6N2E2_1730at 2042.968 kb on + strand, within Pf6N2E2_1730at 2042.968 kb on + strand, within Pf6N2E2_1730at 2042.968 kb on + strand, within Pf6N2E2_1730at 2042.968 kb on + strand, within Pf6N2E2_1730at 2042.969 kb on - strand, within Pf6N2E2_1730at 2042.969 kb on - strand, within Pf6N2E2_1730at 2042.969 kb on - strand, within Pf6N2E2_1730at 2043.169 kb on + strand, within Pf6N2E2_1730at 2043.377 kb on + strand, within Pf6N2E2_1730at 2043.427 kb on + strandat 2043.487 kb on - strandat 2043.934 kb on + strand, within Pf6N2E2_1731at 2043.934 kb on + strand, within Pf6N2E2_1731at 2043.935 kb on - strand, within Pf6N2E2_1731at 2043.935 kb on - strand, within Pf6N2E2_1731at 2043.935 kb on - strand, within Pf6N2E2_1731at 2044.068 kb on + strand, within Pf6N2E2_1731at 2044.116 kb on + strand, within Pf6N2E2_1731at 2044.116 kb on + strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.117 kb on - strand, within Pf6N2E2_1731at 2044.147 kb on + strand, within Pf6N2E2_1731at 2044.147 kb on + strand, within Pf6N2E2_1731at 2044.147 kb on + strand, within Pf6N2E2_1731at 2044.190 kb on + strand, within Pf6N2E2_1731at 2044.303 kb on + strand, within Pf6N2E2_1731at 2044.304 kb on - strand, within Pf6N2E2_1731at 2044.304 kb on - strand, within Pf6N2E2_1731at 2044.304 kb on - strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.360 kb on + strand, within Pf6N2E2_1731at 2044.361 kb on - strand, within Pf6N2E2_1731at 2044.361 kb on - strand, within Pf6N2E2_1731at 2044.361 kb on - strand, within Pf6N2E2_1731at 2044.361 kb on - strand, within Pf6N2E2_1731at 2044.361 kb on - strand, within Pf6N2E2_1731at 2044.462 kb on + strandat 2044.462 kb on + strandat 2044.463 kb on - strandat 2044.484 kb on - strandat 2044.775 kb on + strandat 2044.775 kb on + strandat 2044.776 kb on - strandat 2044.780 kb on - strandat 2044.822 kb on + strandat 2044.822 kb on + strandat 2044.823 kb on - strandat 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.974 kb on + strand, within Pf6N2E2_1732at 2044.975 kb on - strand, within Pf6N2E2_1732at 2044.975 kb on - strand, within Pf6N2E2_1732at 2044.975 kb on - strand, within Pf6N2E2_1732at 2045.075 kb on - strandat 2045.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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2,042,649 + Pf6N2E2_1730 0.12 +0.9
2,042,656 + Pf6N2E2_1730 0.13 -0.9
2,042,657 - Pf6N2E2_1730 0.13 -0.3
2,042,657 - Pf6N2E2_1730 0.13 +0.4
2,042,788 + Pf6N2E2_1730 0.26 +0.6
2,042,788 + Pf6N2E2_1730 0.26 -0.4
2,042,789 - Pf6N2E2_1730 0.26 -0.2
2,042,917 + Pf6N2E2_1730 0.39 +0.7
2,042,918 - Pf6N2E2_1730 0.39 +0.2
2,042,918 - Pf6N2E2_1730 0.39 +0.1
2,042,935 + Pf6N2E2_1730 0.41 -0.3
2,042,935 + Pf6N2E2_1730 0.41 +0.4
2,042,935 + Pf6N2E2_1730 0.41 -0.6
2,042,936 - Pf6N2E2_1730 0.41 +0.1
2,042,968 + Pf6N2E2_1730 0.45 -0.3
2,042,968 + Pf6N2E2_1730 0.45 -0.0
2,042,968 + Pf6N2E2_1730 0.45 +0.4
2,042,968 + Pf6N2E2_1730 0.45 +0.0
2,042,969 - Pf6N2E2_1730 0.45 -0.2
2,042,969 - Pf6N2E2_1730 0.45 +1.2
2,042,969 - Pf6N2E2_1730 0.45 -0.7
2,043,169 + Pf6N2E2_1730 0.65 -0.1
2,043,377 + Pf6N2E2_1730 0.87 +0.4
2,043,427 + -0.6
2,043,487 - +0.4
2,043,934 + Pf6N2E2_1731 0.43 +1.4
2,043,934 + Pf6N2E2_1731 0.43 -0.6
2,043,935 - Pf6N2E2_1731 0.43 +2.9
2,043,935 - Pf6N2E2_1731 0.43 +0.5
2,043,935 - Pf6N2E2_1731 0.43 +1.0
2,044,068 + Pf6N2E2_1731 0.57 +0.0
2,044,116 + Pf6N2E2_1731 0.62 +1.2
2,044,116 + Pf6N2E2_1731 0.62 +0.5
2,044,117 - Pf6N2E2_1731 0.62 +0.3
2,044,117 - Pf6N2E2_1731 0.62 -1.0
2,044,117 - Pf6N2E2_1731 0.62 +1.3
2,044,117 - Pf6N2E2_1731 0.62 -0.1
2,044,117 - Pf6N2E2_1731 0.62 +0.3
2,044,117 - Pf6N2E2_1731 0.62 +0.2
2,044,117 - Pf6N2E2_1731 0.62 +0.7
2,044,147 + Pf6N2E2_1731 0.66 +1.4
2,044,147 + Pf6N2E2_1731 0.66 +0.5
2,044,147 + Pf6N2E2_1731 0.66 +0.3
2,044,190 + Pf6N2E2_1731 0.70 -1.0
2,044,303 + Pf6N2E2_1731 0.82 +0.2
2,044,304 - Pf6N2E2_1731 0.83 +0.6
2,044,304 - Pf6N2E2_1731 0.83 +0.6
2,044,304 - Pf6N2E2_1731 0.83 -0.2
2,044,360 + Pf6N2E2_1731 0.89 +1.0
2,044,360 + Pf6N2E2_1731 0.89 +0.3
2,044,360 + Pf6N2E2_1731 0.89 -0.0
2,044,360 + Pf6N2E2_1731 0.89 +1.1
2,044,360 + Pf6N2E2_1731 0.89 +0.5
2,044,360 + Pf6N2E2_1731 0.89 -0.1
2,044,361 - Pf6N2E2_1731 0.89 +0.1
2,044,361 - Pf6N2E2_1731 0.89 +0.5
2,044,361 - Pf6N2E2_1731 0.89 +2.0
2,044,361 - Pf6N2E2_1731 0.89 +0.8
2,044,361 - Pf6N2E2_1731 0.89 +0.1
2,044,462 + +0.4
2,044,462 + +0.3
2,044,463 - -0.3
2,044,484 - -0.2
2,044,775 + -0.4
2,044,775 + +0.2
2,044,776 - -0.7
2,044,780 - +0.3
2,044,822 + -1.1
2,044,822 + -0.1
2,044,823 - -0.1
2,044,974 + Pf6N2E2_1732 0.68 -1.0
2,044,974 + Pf6N2E2_1732 0.68 -0.1
2,044,974 + Pf6N2E2_1732 0.68 +2.0
2,044,974 + Pf6N2E2_1732 0.68 -0.2
2,044,974 + Pf6N2E2_1732 0.68 +1.6
2,044,974 + Pf6N2E2_1732 0.68 -0.6
2,044,974 + Pf6N2E2_1732 0.68 -1.1
2,044,975 - Pf6N2E2_1732 0.69 -0.3
2,044,975 - Pf6N2E2_1732 0.69 +0.3
2,044,975 - Pf6N2E2_1732 0.69 +1.4
2,045,075 - +0.2
2,045,087 + +0.2

Or see this region's nucleotide sequence