Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1696

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1695 and Pf6N2E2_1696 are separated by 265 nucleotidesPf6N2E2_1696 and Pf6N2E2_1697 are separated by 116 nucleotides Pf6N2E2_1695 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 2,003,117 to 2,004,304 _1695 Pf6N2E2_1696 - Alkanesulfonates-binding protein, at 2,004,570 to 2,005,418 _1696 Pf6N2E2_1697 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,005,535 to 2,006,665 _1697 Position (kb) 2004 2005 2006Strain fitness (log2 ratio) -2 -1 0 1at 2003.687 kb on - strand, within Pf6N2E2_1695at 2003.687 kb on - strand, within Pf6N2E2_1695at 2003.740 kb on - strand, within Pf6N2E2_1695at 2003.755 kb on - strand, within Pf6N2E2_1695at 2003.876 kb on + strand, within Pf6N2E2_1695at 2003.939 kb on + strand, within Pf6N2E2_1695at 2003.939 kb on + strand, within Pf6N2E2_1695at 2003.940 kb on - strand, within Pf6N2E2_1695at 2003.940 kb on - strand, within Pf6N2E2_1695at 2003.940 kb on - strand, within Pf6N2E2_1695at 2004.296 kb on + strandat 2004.296 kb on + strandat 2004.296 kb on + strandat 2004.297 kb on - strandat 2004.297 kb on - strandat 2004.297 kb on - strandat 2004.297 kb on - strandat 2004.302 kb on + strandat 2004.392 kb on - strandat 2004.392 kb on - strandat 2004.849 kb on + strand, within Pf6N2E2_1696at 2004.850 kb on - strand, within Pf6N2E2_1696at 2004.942 kb on + strand, within Pf6N2E2_1696at 2005.008 kb on + strand, within Pf6N2E2_1696at 2005.009 kb on - strand, within Pf6N2E2_1696at 2005.416 kb on + strandat 2005.426 kb on - strandat 2005.584 kb on - strandat 2005.626 kb on - strandat 2005.626 kb on - strandat 2006.057 kb on + strand, within Pf6N2E2_1697at 2006.114 kb on + strand, within Pf6N2E2_1697at 2006.114 kb on + strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.319 kb on - strand, within Pf6N2E2_1697

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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2,003,687 - Pf6N2E2_1695 0.48 -0.5
2,003,687 - Pf6N2E2_1695 0.48 -0.4
2,003,740 - Pf6N2E2_1695 0.52 +0.7
2,003,755 - Pf6N2E2_1695 0.54 -0.1
2,003,876 + Pf6N2E2_1695 0.64 +0.1
2,003,939 + Pf6N2E2_1695 0.69 -0.0
2,003,939 + Pf6N2E2_1695 0.69 +0.2
2,003,940 - Pf6N2E2_1695 0.69 -1.7
2,003,940 - Pf6N2E2_1695 0.69 +0.6
2,003,940 - Pf6N2E2_1695 0.69 -1.2
2,004,296 + +0.1
2,004,296 + +1.3
2,004,296 + -0.4
2,004,297 - +0.0
2,004,297 - -0.7
2,004,297 - +0.5
2,004,297 - -0.9
2,004,302 + -0.6
2,004,392 - +0.1
2,004,392 - +0.2
2,004,849 + Pf6N2E2_1696 0.33 +0.9
2,004,850 - Pf6N2E2_1696 0.33 -0.9
2,004,942 + Pf6N2E2_1696 0.44 -2.4
2,005,008 + Pf6N2E2_1696 0.52 -0.4
2,005,009 - Pf6N2E2_1696 0.52 -0.5
2,005,416 + -0.2
2,005,426 - +0.3
2,005,584 - +0.8
2,005,626 - +0.3
2,005,626 - -0.2
2,006,057 + Pf6N2E2_1697 0.46 +0.2
2,006,114 + Pf6N2E2_1697 0.51 +0.2
2,006,114 + Pf6N2E2_1697 0.51 -0.3
2,006,115 - Pf6N2E2_1697 0.51 +0.4
2,006,115 - Pf6N2E2_1697 0.51 +0.8
2,006,115 - Pf6N2E2_1697 0.51 -0.5
2,006,319 - Pf6N2E2_1697 0.69 +0.0

Or see this region's nucleotide sequence