Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03999

Experiment: PYE 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 58 days
1,263,354	+		CCNA_01157	0.33	-0.1
1,263,357	-		CCNA_01157	0.33	-1.9
1,263,388	+		CCNA_01157	0.35	+1.0
1,263,397	-		CCNA_01157	0.36	+2.5
1,263,431	+		CCNA_01157	0.38	-0.3
1,263,431	+		CCNA_01157	0.38	-0.2
1,263,439	-		CCNA_01157	0.39	-1.2
1,263,444	+		CCNA_01157	0.39	+0.6
1,263,459	+		CCNA_01157	0.40	-1.6
1,263,462	-		CCNA_01157	0.40	+1.6
1,263,540	+		CCNA_01157	0.46	+0.1
1,263,540	+		CCNA_01157	0.46	+1.3
1,263,540	+		CCNA_01157	0.46	+1.8
1,263,540	+		CCNA_01157	0.46	+1.5
1,263,540	+		CCNA_01157	0.46	+0.7
1,263,548	-		CCNA_01157	0.46	+0.2
1,263,548	-		CCNA_01157	0.46	+1.5
1,263,549	-		CCNA_01157	0.46	-1.7
1,263,549	-		CCNA_01157	0.46	-0.7
1,263,555	-		CCNA_01157	0.47	+2.5
1,263,588	-		CCNA_01157	0.49	-0.8
1,263,612	+		CCNA_01157	0.50	+1.3
1,263,612	+		CCNA_01157	0.50	+0.5
1,263,612	+		CCNA_01157	0.50	-0.6
1,263,612	+		CCNA_01157	0.50	+1.1
1,263,612	+		CCNA_01157	0.50	+0.6
1,263,612	+		CCNA_01157	0.50	+2.5
1,263,612	+		CCNA_01157	0.50	-0.8
1,263,612	+		CCNA_01157	0.50	-0.7
1,263,612	+		CCNA_01157	0.50	+1.5
1,263,620	-		CCNA_01157	0.51	+1.5
1,263,620	-		CCNA_01157	0.51	-1.4
1,263,620	-		CCNA_01157	0.51	-2.0
1,263,620	-		CCNA_01157	0.51	-1.0
1,263,630	+		CCNA_01157	0.52	+0.6
1,263,630	+		CCNA_01157	0.52	-0.4
1,263,630	+		CCNA_01157	0.52	+0.4
1,263,654	+		CCNA_01157	0.53	+2.0
1,263,660	-		CCNA_01157	0.54	-2.1
1,263,734	-		CCNA_01157	0.58	-0.8
1,263,743	-		CCNA_01157	0.59	-1.8
1,263,869	-		CCNA_01157	0.67	+0.9
1,263,880	+		CCNA_01157	0.68	+0.8
1,263,889	+		CCNA_01157	0.69	+1.9
1,263,940	-		CCNA_01157	0.72	-0.8
1,263,967	-		CCNA_01157	0.74	+1.3
1,263,967	-		CCNA_01157	0.74	+2.5
1,264,029	+		CCNA_01157	0.78	-0.2
1,264,039	-		CCNA_01157	0.79	-0.3
1,264,048	-		CCNA_01157	0.79	-0.7
1,264,056	+		CCNA_01157	0.80	+1.1
1,264,056	+		CCNA_01157	0.80	+0.1
1,264,056	+		CCNA_01157	0.80	-0.3
1,264,056	+		CCNA_01157	0.80	+1.1
1,264,056	+		CCNA_01157	0.80	+0.5
1,264,056	+		CCNA_01157	0.80	+0.6
1,264,062	+		CCNA_01157	0.80	+1.2
1,264,062	+		CCNA_01157	0.80	+0.9
1,264,062	+		CCNA_01157	0.80	-2.8
1,264,062	+		CCNA_01157	0.80	+0.2
1,264,062	+		CCNA_01157	0.80	-0.6
1,264,064	-		CCNA_01157	0.80	+0.9
1,264,064	-		CCNA_01157	0.80	-0.7
1,264,070	-		CCNA_01157	0.81	+0.2
1,264,070	-		CCNA_01157	0.81	-0.9
1,264,070	-		CCNA_01157	0.81	-0.1
1,264,091	-		CCNA_01157	0.82	+0.9
1,264,098	+		CCNA_01157	0.83	-0.5
1,264,098	+		CCNA_01157	0.83	-0.8
1,264,098	+		CCNA_01157	0.83	-0.5
1,264,106	-		CCNA_01157	0.83	-0.8
1,264,106	-		CCNA_01157	0.83	+0.5
1,264,117	+		CCNA_01157	0.84	-0.7
1,264,120	-		CCNA_01157	0.84	-0.7
1,264,120	-		CCNA_01157	0.84	-0.5
1,264,133	+		CCNA_01157	0.85	-2.0
1,264,133	+		CCNA_01157	0.85	+0.2
1,264,133	+		CCNA_01157	0.85	+0.4
1,264,133	+		CCNA_01157	0.85	+0.8
1,264,138	+		CCNA_01157	0.85	+1.5
1,264,138	+		CCNA_01157	0.85	-0.6
1,264,138	+		CCNA_01157	0.85	+2.0
1,264,146	-		CCNA_01157	0.86	-0.5
1,264,146	-		CCNA_01157	0.86	+2.5
1,264,188	-		CCNA_01157	0.89	-1.3
1,264,195	+		CCNA_01157	0.89	+0.8
1,264,209	+				+1.5
1,264,209	+				+1.0
1,264,210	-				-0.1
1,264,216	+				+1.6
1,264,224	-				-1.6
1,264,249	-				+0.2
1,264,260	+				+1.0
1,264,268	-				+0.9
1,264,307	+				+0.9
1,264,307	+				+0.5
1,264,307	+				-0.7
1,264,315	-				-0.7
1,264,337	+				+0.6
1,264,356	+				+1.0
1,264,356	+				+0.4
1,264,364	-				+0.7
1,264,399	+		CCNA_03999	0.10	+0.1
1,264,408	+		CCNA_03999	0.12	+0.7
1,264,427	+		CCNA_03999	0.17	+0.7
1,264,435	-		CCNA_03999	0.18	+0.5
1,264,453	+		CCNA_03999	0.23	+1.0
1,264,470	+		CCNA_03999	0.26	+0.4
1,264,475	+		CCNA_03999	0.27	+0.4
1,264,475	+		CCNA_03999	0.27	+1.4
1,264,475	+		CCNA_03999	0.27	+1.5
1,264,485	+		CCNA_03999	0.30	+1.7
1,264,485	+		CCNA_03999	0.30	-0.2
1,264,486	+		CCNA_03999	0.30	+1.5
1,264,497	+		CCNA_03999	0.32	+0.7
1,264,502	+		CCNA_03999	0.34	+1.8
1,264,502	+		CCNA_03999	0.34	+0.7
1,264,503	-		CCNA_03999	0.34	+2.5
1,264,510	-		CCNA_03999	0.35	+2.3
1,264,523	-		CCNA_03999	0.38	-0.8
1,264,538	+		CCNA_03999	0.42	+0.5
1,264,538	+		CCNA_03999	0.42	+1.1
1,264,539	+		CCNA_03999	0.42	+0.6
1,264,539	+		CCNA_03999	0.42	-0.8
1,264,540	+		CCNA_03999	0.42	+0.7
1,264,541	-		CCNA_03999	0.42	-2.8
1,264,546	-		CCNA_03999	0.43	-1.6
1,264,548	-		CCNA_03999	0.44	+0.3
1,264,563	+		CCNA_03999	0.47	+1.1
1,264,631	-		CCNA_03999	0.63	-2.3
1,264,633	+		CCNA_03999	0.63	+1.2
1,264,633	+		CCNA_03999	0.63	+0.8
1,264,633	+		CCNA_03999	0.63	+1.2
1,264,646	-		CCNA_03999	0.66	+1.5
1,264,650	+		CCNA_03999	0.67	+2.7
1,264,653	-		CCNA_03999	0.68	-0.7
1,264,738	-		CCNA_03999	0.87	+2.5
1,264,755	+				+1.3
1,264,755	+				+2.1
1,264,755	+				-0.3
1,264,755	+				+1.1
1,264,760	+				+1.8
1,264,763	-				+2.5
1,264,763	-				+2.5
1,264,775	+				+0.9
1,264,827	+				+0.9
1,264,856	+				-0.6
1,264,859	-				-2.2
1,264,859	-				-0.3
1,264,863	-				-0.3
1,264,873	+				-0.2
1,264,921	+				-0.3
1,264,929	-				-1.7
1,264,934	-				+0.5
1,264,934	-				+2.5
1,265,014	+		CCNA_01158	0.12	-0.8
1,265,027	-		CCNA_01158	0.12	-1.7
1,265,052	+		CCNA_01158	0.14	-0.8
1,265,060	-		CCNA_01158	0.14	-1.0
1,265,077	-		CCNA_01158	0.15	-0.3
1,265,077	-		CCNA_01158	0.15	-1.1
1,265,082	-		CCNA_01158	0.15	-1.2
1,265,082	-		CCNA_01158	0.15	-1.1
1,265,082	-		CCNA_01158	0.15	-0.5
1,265,118	-		CCNA_01158	0.17	-0.7
1,265,133	-		CCNA_01158	0.18	+1.0
1,265,137	+		CCNA_01158	0.18	+0.5
1,265,176	+		CCNA_01158	0.20	-1.3
1,265,202	+		CCNA_01158	0.21	+0.3
1,265,202	+		CCNA_01158	0.21	+1.1
1,265,210	-		CCNA_01158	0.22	+0.2
1,265,210	-		CCNA_01158	0.22	+0.2
1,265,212	+		CCNA_01158	0.22	-0.5
1,265,217	+		CCNA_01158	0.22	-0.6
1,265,220	-		CCNA_01158	0.22	-2.0
1,265,225	-		CCNA_01158	0.23	+0.2
1,265,252	+		CCNA_01158	0.24	+1.3
1,265,279	+		CCNA_01158	0.25	+0.6
1,265,288	+				+1.5
1,265,288	+		CCNA_01158	0.26	+0.9
1,265,289	+		CCNA_01158	0.26	+0.3
1,265,296	-		CCNA_01158	0.26	-0.5
1,265,349	-		CCNA_01158	0.29	+0.5
1,265,376	+		CCNA_01158	0.30	-1.2
1,265,376	+		CCNA_01158	0.30	-0.5
1,265,384	-		CCNA_01158	0.31	+2.5
1,265,385	+		CCNA_01158	0.31	-0.4
1,265,398	-		CCNA_01158	0.32	-0.5
1,265,403	-		CCNA_01158	0.32	+0.5
1,265,414	+		CCNA_01158	0.32	-0.4
1,265,429	-		CCNA_01158	0.33	-0.1
1,265,433	+		CCNA_01158	0.33	+0.4
1,265,466	+		CCNA_01158	0.35	-0.1
1,265,477	+		CCNA_01158	0.36	-1.6
1,265,546	+		CCNA_01158	0.39	+2.6
1,265,554	-		CCNA_01158	0.40	-0.3
1,265,570	+		CCNA_01158	0.41	+0.0
1,265,570	+		CCNA_01158	0.41	-1.1
1,265,575	+		CCNA_01158	0.41	-2.1
1,265,578	-		CCNA_01158	0.41	+0.7
1,265,578	-		CCNA_01158	0.41	-1.1
1,265,578	-		CCNA_01158	0.41	-1.0
1,265,578	-		CCNA_01158	0.41	+2.0
1,265,707	-		CCNA_01158	0.48	+0.9
1,265,722	+		CCNA_01158	0.48	-0.0
1,265,725	-		CCNA_01158	0.49	-0.3
1,265,733	+		CCNA_01158	0.49	-1.0
1,265,755	+		CCNA_01158	0.50	+1.0
1,265,755	+		CCNA_01158	0.50	+0.6
1,265,763	-		CCNA_01158	0.51	-1.1
1,265,766	+		CCNA_01158	0.51	+0.1
1,265,766	+		CCNA_01158	0.51	+0.6
1,265,771	+		CCNA_01158	0.51	-1.1
1,265,771	+		CCNA_01158	0.51	+0.6
1,265,771	+		CCNA_01158	0.51	+1.5
1,265,771	+		CCNA_01158	0.51	+0.7
1,265,771	+		CCNA_01158	0.51	-0.1
1,265,776	+		CCNA_01158	0.51	-0.3
1,265,776	+		CCNA_01158	0.51	+0.5
1,265,781	+		CCNA_01158	0.52	+2.1
1,265,781	+		CCNA_01158	0.52	-1.9
1,265,784	-				-2.0
1,265,792	+		CCNA_01158	0.52	-0.9