Experiment: PYE 4C survival rep2 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00700 and CCNA_00701 are separated by 586 nucleotides CCNA_00701 and CCNA_03888 are separated by 144 nucleotides CCNA_03888 and CCNA_00703 are separated by 102 nucleotides CCNA_00703 and CCNA_00704 are separated by 42 nucleotides CCNA_00704 and CCNA_00705 are separated by 151 nucleotides
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820
_00701
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633
_00703
CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873
_00704
CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315
_00705
Position (kb) 761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 760.989 kb on + strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.130 kb on - strand at 761.135 kb on + strand at 761.143 kb on - strand at 761.146 kb on + strand at 761.213 kb on + strand at 761.231 kb on + strand at 761.252 kb on + strand at 761.275 kb on - strand at 761.544 kb on - strand at 761.544 kb on - strand at 761.580 kb on - strand at 761.580 kb on - strand at 761.610 kb on + strand at 761.632 kb on - strand, within CCNA_00701 at 761.650 kb on + strand, within CCNA_00701 at 761.651 kb on + strand, within CCNA_00701 at 761.667 kb on + strand, within CCNA_00701 at 761.670 kb on - strand, within CCNA_00701 at 761.671 kb on + strand, within CCNA_00701 at 761.675 kb on - strand, within CCNA_00701 at 761.689 kb on - strand, within CCNA_00701 at 761.717 kb on + strand, within CCNA_00701 at 761.717 kb on + strand at 761.722 kb on + strand, within CCNA_00701 at 761.725 kb on - strand, within CCNA_00701 at 761.730 kb on - strand, within CCNA_00701 at 761.743 kb on + strand, within CCNA_00701 at 761.751 kb on + strand, within CCNA_00701 at 761.751 kb on - strand, within CCNA_00701 at 761.759 kb on - strand, within CCNA_00701 at 761.776 kb on - strand, within CCNA_00701 at 761.785 kb on + strand, within CCNA_00701 at 761.831 kb on + strand at 761.839 kb on - strand at 761.839 kb on - strand at 761.848 kb on + strand at 761.849 kb on - strand at 761.856 kb on - strand at 761.905 kb on - strand at 761.907 kb on + strand at 761.910 kb on - strand at 761.921 kb on + strand at 761.932 kb on + strand at 761.945 kb on - strand at 762.035 kb on + strand, within CCNA_03888 at 762.048 kb on + strand, within CCNA_03888 at 762.067 kb on + strand, within CCNA_03888 at 762.084 kb on + strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.108 kb on + strand, within CCNA_03888 at 762.111 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.157 kb on - strand, within CCNA_03888 at 762.167 kb on - strand, within CCNA_03888 at 762.217 kb on + strand, within CCNA_03888 at 762.238 kb on - strand, within CCNA_03888 at 762.239 kb on + strand, within CCNA_03888 at 762.249 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.264 kb on - strand, within CCNA_03888 at 762.279 kb on + strand, within CCNA_03888 at 762.287 kb on - strand, within CCNA_03888 at 762.307 kb on + strand at 762.341 kb on + strand at 762.341 kb on + strand at 762.346 kb on + strand at 762.349 kb on - strand at 762.349 kb on - strand at 762.354 kb on - strand at 762.354 kb on - strand at 762.385 kb on - strand at 762.385 kb on - strand at 762.412 kb on + strand at 762.419 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.475 kb on - strand, within CCNA_00703 at 762.480 kb on + strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.501 kb on - strand, within CCNA_00703 at 762.558 kb on - strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.580 kb on - strand, within CCNA_00703 at 762.583 kb on + strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.632 kb on + strand at 762.669 kb on - strand at 762.696 kb on + strand, within CCNA_00704 at 762.696 kb on + strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.729 kb on + strand, within CCNA_00704 at 762.836 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.902 kb on - strand at 762.902 kb on - strand at 762.906 kb on + strand at 762.906 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.924 kb on - strand at 762.951 kb on + strand at 762.951 kb on + strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 763.010 kb on + strand at 763.018 kb on - strand at 763.064 kb on + strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.105 kb on - strand, within CCNA_00705 at 763.125 kb on + strand, within CCNA_00705 at 763.183 kb on - strand, within CCNA_00705 at 763.263 kb on + strand, within CCNA_00705 at 763.273 kb on + strand, within CCNA_00705 at 763.281 kb on - strand, within CCNA_00705 at 763.300 kb on - strand at 763.305 kb on - strand at 763.322 kb on - strand at 763.322 kb on - strand at 763.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days remove 760,989 + -0.3 761,076 - +0.9 761,076 - -0.9 761,076 - +0.4 761,130 - +0.3 761,135 + -2.3 761,143 - -3.5 761,146 + +1.2 761,213 + -1.4 761,231 + -0.5 761,252 + -0.3 761,275 - +1.0 761,544 - -2.3 761,544 - -1.5 761,580 - -0.7 761,580 - -0.6 761,610 + -1.2 761,632 - CCNA_00701 0.10 -1.5 761,650 + CCNA_00701 0.19 +0.4 761,651 + CCNA_00701 0.19 +0.7 761,667 + CCNA_00701 0.27 +1.2 761,670 - CCNA_00701 0.28 -0.0 761,671 + CCNA_00701 0.29 +0.7 761,675 - CCNA_00701 0.30 -1.5 761,689 - CCNA_00701 0.37 -2.3 761,717 + CCNA_00701 0.50 +1.7 761,717 + -1.3 761,722 + CCNA_00701 0.53 -1.1 761,725 - CCNA_00701 0.54 +2.6 761,730 - CCNA_00701 0.57 -0.7 761,743 + CCNA_00701 0.63 +0.2 761,751 + CCNA_00701 0.67 -3.7 761,751 - CCNA_00701 0.67 +1.6 761,759 - CCNA_00701 0.70 -0.5 761,776 - CCNA_00701 0.79 -1.2 761,785 + CCNA_00701 0.83 -0.1 761,831 + +2.2 761,839 - +0.6 761,839 - -0.2 761,848 + -0.3 761,849 - +0.6 761,856 - +1.5 761,905 - -1.0 761,907 + -1.2 761,910 - -0.3 761,921 + -0.3 761,932 + +3.2 761,945 - +2.0 762,035 + CCNA_03888 0.19 +0.6 762,048 + CCNA_03888 0.23 -0.5 762,067 + CCNA_03888 0.28 +0.8 762,084 + CCNA_03888 0.33 +0.7 762,092 - CCNA_03888 0.35 +1.5 762,092 - CCNA_03888 0.35 +1.6 762,092 - CCNA_03888 0.35 +0.4 762,092 - CCNA_03888 0.35 +0.5 762,092 - CCNA_03888 0.35 +2.9 762,092 - CCNA_03888 0.35 +2.2 762,092 - CCNA_03888 0.35 -0.1 762,108 + CCNA_03888 0.40 +2.1 762,111 - CCNA_03888 0.41 +2.6 762,116 - CCNA_03888 0.42 +2.7 762,116 - CCNA_03888 0.42 +1.3 762,157 - CCNA_03888 0.53 +0.8 762,167 - CCNA_03888 0.56 +2.3 762,217 + CCNA_03888 0.70 +1.6 762,238 - CCNA_03888 0.76 +1.3 762,239 + CCNA_03888 0.76 +1.8 762,249 + CCNA_03888 0.79 +0.3 762,256 + CCNA_03888 0.81 +2.3 762,256 + CCNA_03888 0.81 -1.0 762,264 - CCNA_03888 0.83 -1.0 762,279 + CCNA_03888 0.87 +0.7 762,287 - CCNA_03888 0.89 +0.4 762,307 + +0.5 762,341 + -2.4 762,341 + +0.9 762,346 + +0.5 762,349 - -0.4 762,349 - -0.8 762,354 - -1.5 762,354 - +0.0 762,385 - +1.1 762,385 - +0.2 762,412 + +0.3 762,419 + -2.1 762,424 + +1.0 762,424 + -0.3 762,424 + +1.6 762,424 + +0.6 762,432 - -0.4 762,432 - +0.6 762,432 - +0.3 762,432 - -0.1 762,432 - -0.9 762,475 - CCNA_00703 0.23 +0.1 762,480 + CCNA_00703 0.26 -1.9 762,488 - CCNA_00703 0.29 +3.3 762,488 - CCNA_00703 0.29 +1.4 762,501 - CCNA_00703 0.36 +0.2 762,558 - CCNA_00703 0.63 +0.7 762,577 + CCNA_00703 0.72 +0.8 762,577 + CCNA_00703 0.72 +3.2 762,580 - CCNA_00703 0.74 +0.5 762,583 + CCNA_00703 0.75 -1.3 762,585 - CCNA_00703 0.76 +0.3 762,585 - CCNA_00703 0.76 +1.6 762,585 - CCNA_00703 0.76 +1.0 762,585 - CCNA_00703 0.76 -1.0 762,585 - CCNA_00703 0.76 -0.4 762,585 - CCNA_00703 0.76 +2.6 762,590 - CCNA_00703 0.79 +0.6 762,590 - CCNA_00703 0.79 +1.0 762,632 + +0.7 762,669 - +0.3 762,696 + CCNA_00704 0.10 +0.3 762,696 + CCNA_00704 0.10 +0.9 762,704 - CCNA_00704 0.14 -0.6 762,704 - CCNA_00704 0.14 -3.5 762,704 - CCNA_00704 0.14 -0.9 762,729 + CCNA_00704 0.27 +2.2 762,836 - CCNA_00704 0.81 +0.7 762,847 - CCNA_00704 0.86 -2.0 762,847 - CCNA_00704 0.86 -1.2 762,902 - -1.0 762,902 - +3.6 762,906 + +0.4 762,906 + +0.2 762,916 + +0.9 762,916 + +1.5 762,916 + +1.0 762,924 - +1.1 762,951 + +0.6 762,951 + +0.1 762,959 - -0.4 762,959 - -0.0 762,959 - -0.4 762,959 - +0.0 762,959 - -1.0 763,010 + +1.9 763,018 - +0.8 763,064 + CCNA_00705 0.13 +2.6 763,072 - CCNA_00705 0.16 -0.6 763,072 - CCNA_00705 0.16 -0.5 763,072 - CCNA_00705 0.16 +0.3 763,105 - CCNA_00705 0.27 +2.1 763,125 + CCNA_00705 0.34 -1.1 763,183 - CCNA_00705 0.54 +0.5 763,263 + CCNA_00705 0.82 -2.6 763,273 + CCNA_00705 0.85 -0.8 763,281 - CCNA_00705 0.88 +0.8 763,300 - +1.5 763,305 - +1.4 763,322 - +1.1 763,322 - +0.3 763,324 - +1.0
Or see this region's nucleotide sequence