Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03796

Experiment: PYE 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 58 days
3,958,601	+				-1.2
3,958,609	-				-0.3
3,958,609	-				-0.6
3,958,639	+				+0.2
3,958,644	+				+0.0
3,958,649	+				-0.1
3,958,658	+				-0.1
3,958,666	-				-2.2
3,958,727	+				-1.4
3,958,727	+				-1.0
3,958,733	-				-3.2
3,958,780	+				-0.6
3,958,790	-				-2.3
3,958,790	-				-4.0
3,958,792	+				-0.3
3,958,818	-				-1.2
3,958,847	-		CCNA_03795	0.10	+0.8
3,958,860	-		CCNA_03795	0.13	-1.1
3,958,922	+		CCNA_03795	0.27	-0.8
3,958,927	+		CCNA_03795	0.28	-2.0
3,958,935	-		CCNA_03795	0.29	-1.0
3,958,935	-				+0.0
3,959,010	-		CCNA_03795	0.46	-1.6
3,959,052	-		CCNA_03795	0.55	-2.9
3,959,060	+		CCNA_03795	0.57	-0.2
3,959,060	+		CCNA_03795	0.57	+0.6
3,959,067	+		CCNA_03795	0.58	+0.6
3,959,068	-		CCNA_03795	0.58	-1.2
3,959,120	+		CCNA_03795	0.70	-0.9
3,959,128	-		CCNA_03795	0.71	-3.1
3,959,128	-		CCNA_03795	0.71	-2.4
3,959,128	-		CCNA_03795	0.71	-0.8
3,959,172	-		CCNA_03795	0.81	-0.9
3,959,179	-		CCNA_03795	0.83	-3.3
3,959,189	-		CCNA_03795	0.85	-0.5
3,959,215	+				-0.8
3,959,268	+				-0.7
3,959,268	+				-0.0
3,959,281	+				+0.3
3,959,294	-				+0.6
3,959,312	+				-0.1
3,959,339	+				+1.0
3,959,356	+				+0.5
3,959,386	-				+0.2
3,959,401	+				-0.0
3,959,417	-				-0.8
3,959,427	+				-2.1
3,959,432	-				-0.0
3,959,442	+				-2.7
3,959,443	+				-0.5
3,959,470	-				+3.0
3,959,481	+				+0.3
3,959,481	+				-2.2
3,959,489	-				-0.3
3,959,502	+				+0.0
3,959,502	+				-0.8
3,959,510	-				+0.7
3,959,510	-				-2.1
3,959,527	+				+1.6
3,959,540	-				+0.4
3,959,565	+				-2.0
3,959,566	+				+1.0
3,959,595	+				+0.1
3,959,595	+				+0.2
3,959,641	+				+0.6
3,959,641	+				-0.3
3,959,649	-		CCNA_03796	0.10	+0.1
3,959,663	-		CCNA_03796	0.11	-0.9
3,959,663	-		CCNA_03796	0.11	+0.1
3,959,711	+		CCNA_03796	0.16	-3.7
3,959,711	+		CCNA_03796	0.16	-0.5
3,959,711	+		CCNA_03796	0.16	+0.4
3,959,712	+		CCNA_03796	0.16	-1.1
3,959,712	+		CCNA_03796	0.16	+2.8
3,959,712	+		CCNA_03796	0.16	-1.5
3,959,719	-		CCNA_03796	0.17	+0.0
3,959,719	-		CCNA_03796	0.17	+2.0
3,959,719	-		CCNA_03796	0.17	-1.0
3,959,720	-		CCNA_03796	0.17	-0.8
3,959,721	+		CCNA_03796	0.17	+0.0
3,959,722	+		CCNA_03796	0.17	+2.0
3,959,727	+		CCNA_03796	0.18	-0.6
3,959,730	-		CCNA_03796	0.18	+1.0
3,959,730	-		CCNA_03796	0.18	+1.0
3,959,730	-		CCNA_03796	0.18	-1.6
3,959,732	+		CCNA_03796	0.18	-0.8
3,959,747	+		CCNA_03796	0.20	-1.2
3,959,747	+		CCNA_03796	0.20	-1.7
3,959,747	+		CCNA_03796	0.20	-1.0
3,959,755	-		CCNA_03796	0.21	-1.9
3,959,776	+		CCNA_03796	0.23	-0.2
3,959,841	+		CCNA_03796	0.29	-0.8
3,959,849	-		CCNA_03796	0.30	+0.3
3,959,885	-		CCNA_03796	0.33	+1.0
3,959,892	-		CCNA_03796	0.34	-1.2
3,959,894	+		CCNA_03796	0.34	+0.3
3,959,894	+		CCNA_03796	0.34	+1.3
3,959,894	+		CCNA_03796	0.34	-0.6
3,959,894	+		CCNA_03796	0.34	+0.7
3,959,894	+		CCNA_03796	0.34	-0.5
3,959,894	+		CCNA_03796	0.34	-0.3
3,959,894	+		CCNA_03796	0.34	-1.4
3,959,894	+		CCNA_03796	0.34	-0.8
3,959,894	+		CCNA_03796	0.34	-0.4
3,959,894	+		CCNA_03796	0.34	+0.3
3,959,894	+		CCNA_03796	0.34	+0.1
3,959,894	+		CCNA_03796	0.34	-0.7
3,959,902	-		CCNA_03796	0.35	-0.8
3,959,902	-		CCNA_03796	0.35	+1.0
3,959,902	-		CCNA_03796	0.35	-1.0
3,959,902	-		CCNA_03796	0.35	-3.2
3,959,902	-		CCNA_03796	0.35	-1.6
3,959,902	-		CCNA_03796	0.35	-3.6
3,959,902	-		CCNA_03796	0.35	-0.8
3,959,902	-		CCNA_03796	0.35	-1.5
3,959,902	-		CCNA_03796	0.35	-1.2
3,959,902	-		CCNA_03796	0.35	-1.6
3,959,902	-		CCNA_03796	0.35	-1.0
3,959,917	-		CCNA_03796	0.37	-1.8
3,959,939	-		CCNA_03796	0.39	-0.7
3,959,947	+		CCNA_03796	0.40	-1.0
3,959,947	+		CCNA_03796	0.40	+0.9
3,959,947	+		CCNA_03796	0.40	-0.6
3,959,952	+		CCNA_03796	0.40	-0.4
3,959,952	+		CCNA_03796	0.40	-2.3
3,959,952	+		CCNA_03796	0.40	-1.1
3,959,952	+		CCNA_03796	0.40	-1.0
3,959,952	+		CCNA_03796	0.40	-2.0
3,959,955	-		CCNA_03796	0.40	-2.3
3,959,960	-		CCNA_03796	0.41	+0.0
3,959,960	-		CCNA_03796	0.41	-0.8
3,959,960	-		CCNA_03796	0.41	-0.1
3,959,960	-		CCNA_03796	0.41	-2.9
3,959,979	+		CCNA_03796	0.43	+0.2
3,959,987	-		CCNA_03796	0.44	-1.6
3,960,003	+		CCNA_03796	0.45	-0.1
3,960,043	+		CCNA_03796	0.49	-1.8
3,960,051	-		CCNA_03796	0.50	-0.6
3,960,056	-		CCNA_03796	0.50	+2.0
3,960,074	-		CCNA_03796	0.52	-0.1
3,960,107	+		CCNA_03796	0.55	+1.1
3,960,107	+		CCNA_03796	0.55	-0.6
3,960,110	+		CCNA_03796	0.56	-0.7
3,960,124	+		CCNA_03796	0.57	+0.4
3,960,136	+		CCNA_03796	0.58	+0.1
3,960,151	+		CCNA_03796	0.60	-0.9
3,960,182	+		CCNA_03796	0.63	-0.4
3,960,233	-		CCNA_03796	0.68	-1.4
3,960,237	+		CCNA_03796	0.68	-1.7
3,960,266	+		CCNA_03796	0.71	-2.0
3,960,266	+		CCNA_03796	0.71	-0.4
3,960,266	+		CCNA_03796	0.71	+1.4
3,960,266	+		CCNA_03796	0.71	-0.4
3,960,268	+		CCNA_03796	0.71	+0.6
3,960,283	-		CCNA_03796	0.73	+1.0
3,960,283	-		CCNA_03796	0.73	-0.3
3,960,315	+		CCNA_03796	0.76	-0.3
3,960,320	+		CCNA_03796	0.76	-0.3
3,960,320	+		CCNA_03796	0.76	-1.3
3,960,320	+		CCNA_03796	0.76	-0.4
3,960,328	-		CCNA_03796	0.77	+1.3
3,960,344	+		CCNA_03796	0.79	-0.1
3,960,366	-		CCNA_03796	0.81	-0.9
3,960,368	+		CCNA_03796	0.81	-0.9
3,960,369	+		CCNA_03796	0.81	-3.1
3,960,420	+		CCNA_03796	0.86	+0.5
3,960,428	-		CCNA_03796	0.87	+1.0
3,960,428	-		CCNA_03796	0.87	-1.2
3,960,445	-		CCNA_03796	0.89	-1.7
3,960,445	-		CCNA_03796	0.89	-1.7
3,960,448	+		CCNA_03796	0.89	-2.1
3,960,456	-		CCNA_03796	0.90	-1.0
3,960,466	+				+0.2
3,960,486	+				-0.2
3,960,486	+				-0.5
3,960,494	-				-1.8
3,960,508	-				+3.0
3,960,607	+				+1.1
3,960,642	+				-0.9
3,960,642	+				-0.2
3,960,642	+				+0.3
3,960,642	+				-0.1
3,960,642	+				-2.3
3,960,642	+				-2.3
3,960,642	+				+0.0
3,960,642	+				+1.1
3,960,642	+				-2.2
3,960,642	+				-2.8
3,960,650	-				+0.9
3,960,650	-				+0.4
3,960,650	-				-0.0
3,960,650	-				+1.7
3,960,650	-				-0.9
3,960,654	+				+0.8
3,960,662	-				-2.1
3,960,673	+				-0.8
3,960,674	+				+0.1
3,960,674	+				+0.7
3,960,686	+				+1.2
3,960,695	-				+0.6
3,960,732	+				-0.6
3,960,762	-				+0.3
3,960,846	-				+0.4
3,960,846	-		CCNA_03797	0.25	+0.0
3,960,860	-		CCNA_03797	0.29	-1.8
3,960,924	+		CCNA_03797	0.44	-0.3
3,960,924	+		CCNA_03797	0.44	-1.3
3,960,931	+		CCNA_03797	0.45	-2.7
3,960,931	+		CCNA_03797	0.45	-0.8
3,960,931	+		CCNA_03797	0.45	-1.7
3,960,939	-		CCNA_03797	0.47	-0.2
3,960,939	-		CCNA_03797	0.47	-2.6
3,960,939	-		CCNA_03797	0.47	-1.3
3,960,939	-		CCNA_03797	0.47	-0.5
3,960,939	-		CCNA_03797	0.47	+0.5
3,960,939	-		CCNA_03797	0.47	+0.4
3,960,965	+		CCNA_03797	0.53	-2.2
3,960,983	-		CCNA_03797	0.57	-1.2
3,961,010	+		CCNA_03797	0.63	-2.0
3,961,010	+		CCNA_03797	0.63	+0.5
3,961,018	-		CCNA_03797	0.65	-0.7
3,961,022	+		CCNA_03797	0.66	-1.7
3,961,023	-		CCNA_03797	0.66	-0.6
3,961,042	-		CCNA_03797	0.71	-0.4
3,961,042	-		CCNA_03797	0.71	+0.0
3,961,069	-		CCNA_03797	0.77	+0.4
3,961,161	+				-2.1
3,961,161	+				-1.0
3,961,161	+				+1.3
3,961,173	-				+1.3