Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03610

Experiment: PYE 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 58 days
3,763,432	-		CCNA_03609	0.58	-1.7
3,763,442	-		CCNA_03609	0.59	-3.1
3,763,525	-		CCNA_03609	0.66	-1.8
3,763,589	-		CCNA_03609	0.71	+0.9
3,763,607	-		CCNA_03609	0.73	-1.2
3,763,660	-		CCNA_03609	0.77	-2.0
3,763,660	-		CCNA_03609	0.77	-1.9
3,763,660	-		CCNA_03609	0.77	+1.0
3,763,761	-		CCNA_03609	0.86	+0.3
3,763,869	-				-3.3
3,763,893	-				-0.5
3,763,937	+				-0.3
3,763,983	-				-0.5
3,764,149	-				-0.5
3,764,156	-				-0.3
3,764,184	-				-3.1
3,764,202	-				+0.7
3,764,242	+				+0.0
3,764,244	+				-3.0
3,764,244	+				-0.8
3,764,244	+				-1.4
3,764,250	-				-1.2
3,764,250	-				-0.3
3,764,250	-				-0.4
3,764,252	-				+3.3
3,764,252	-				-1.3
3,764,252	-				+0.8
3,764,266	-				+0.9
3,764,331	+				-0.2
3,764,331	+				-0.3
3,764,331	+				-2.1
3,764,331	+				-1.3
3,764,331	+				+0.9
3,764,332	+				-2.7
3,764,332	+				-1.2
3,764,332	+				-3.5
3,764,339	-				-1.8
3,764,339	-				-1.7
3,764,345	-				+0.7
3,764,378	-				+0.6
3,764,383	-				+0.6
3,764,388	-				+0.1
3,764,393	-				+0.2
3,764,393	-				-0.3
3,764,417	-		CCNA_03610	0.10	+0.0
3,764,417	-		CCNA_03610	0.10	-0.3
3,764,462	+		CCNA_03610	0.15	-0.3
3,764,462	+		CCNA_03610	0.15	-0.1
3,764,462	+		CCNA_03610	0.15	-0.4
3,764,467	+		CCNA_03610	0.16	-2.2
3,764,472	-		CCNA_03610	0.17	-2.7
3,764,475	-		CCNA_03610	0.17	+1.0
3,764,489	+		CCNA_03610	0.19	-0.8
3,764,489	+		CCNA_03610	0.19	-1.3
3,764,489	+				-1.6
3,764,497	+		CCNA_03610	0.20	-1.4
3,764,505	-		CCNA_03610	0.21	+0.9
3,764,512	+		CCNA_03610	0.21	-1.3
3,764,530	-		CCNA_03610	0.24	+0.5
3,764,532	+		CCNA_03610	0.24	+4.6
3,764,589	-		CCNA_03610	0.31	-0.4
3,764,635	+		CCNA_03610	0.36	-0.5
3,764,638	-		CCNA_03610	0.37	+0.1
3,764,643	-		CCNA_03610	0.37	-0.5
3,764,643	-		CCNA_03610	0.37	-0.8
3,764,654	+		CCNA_03610	0.39	-1.0
3,764,662	-		CCNA_03610	0.39	-2.0
3,764,679	+		CCNA_03610	0.42	-1.8
3,764,707	-		CCNA_03610	0.45	+0.0
3,764,707	-		CCNA_03610	0.45	-3.3
3,764,707	-		CCNA_03610	0.45	-2.7
3,764,707	-		CCNA_03610	0.45	-2.4
3,764,718	+		CCNA_03610	0.46	+1.3
3,764,724	+		CCNA_03610	0.47	-0.6
3,764,724	+		CCNA_03610	0.47	+0.5
3,764,726	-		CCNA_03610	0.47	-1.5
3,764,726	-		CCNA_03610	0.47	-2.9
3,764,732	-		CCNA_03610	0.48	-0.7
3,764,732	-		CCNA_03610	0.48	-1.2
3,764,771	-		CCNA_03610	0.53	-0.6
3,764,798	-		CCNA_03610	0.56	+0.7
3,764,826	-		CCNA_03610	0.59	-0.1
3,764,845	-		CCNA_03610	0.61	-1.4
3,764,852	-		CCNA_03610	0.62	+0.7
3,764,856	+		CCNA_03610	0.63	-0.3
3,764,885	-		CCNA_03610	0.66	+0.6
3,764,886	+		CCNA_03610	0.66	+1.0
3,764,911	+		CCNA_03610	0.69	-0.4
3,764,919	-		CCNA_03610	0.70	-1.1
3,764,919	-		CCNA_03610	0.70	-0.5
3,764,921	-		CCNA_03610	0.71	+0.3
3,764,941	-		CCNA_03610	0.73	-0.4
3,764,941	-		CCNA_03610	0.73	+0.9
3,764,988	+		CCNA_03610	0.79	-2.4
3,765,020	-		CCNA_03610	0.83	-0.0
3,765,020	-		CCNA_03610	0.83	-0.6
3,765,038	+		CCNA_03610	0.85	+2.0
3,765,046	-		CCNA_03610	0.86	+0.3
3,765,048	+		CCNA_03610	0.86	+0.5
3,765,048	+		CCNA_03610	0.86	+1.5
3,765,056	-		CCNA_03610	0.87	-2.0
3,765,092	-				+0.2
3,765,106	+				+1.1
3,765,106	+				-2.4
3,765,106	+				-2.5
3,765,106	+				-2.5
3,765,106	+				-0.8
3,765,106	+				-2.2
3,765,109	-				-0.8
3,765,109	-				+0.4
3,765,114	-				+2.5
3,765,114	-				+0.1
3,765,114	-				-0.8
3,765,114	-				-2.0
3,765,114	-				-0.9
3,765,182	+				-0.7
3,765,220	-				-3.0
3,765,227	-				-4.1
3,765,281	+				-3.4
3,765,317	-				-0.8
3,765,322	-				-0.8
3,765,339	-				-1.3
3,765,339	-				-1.5
3,765,339	-				-1.1
3,765,339	-				-2.9
3,765,341	+				-4.6
3,765,351	+				-2.7
3,765,351	+				+0.0
3,765,351	+				-1.5
3,765,351	+				-2.5
3,765,354	-				-2.2
3,765,359	+				-2.6
3,765,359	-				-2.4
3,765,359	-				-1.7
3,765,359	-				-2.9
3,765,361	+				+2.0
3,765,369	-				-1.0
3,765,387	+				-1.1
3,765,409	+		CCNA_03611	0.11	-4.1
3,765,411	+		CCNA_03611	0.11	+0.0
3,765,472	-		CCNA_03611	0.15	+2.0
3,765,508	+		CCNA_03611	0.17	-0.5
3,765,508	+		CCNA_03611	0.17	-2.0
3,765,508	+		CCNA_03611	0.17	-1.1
3,765,508	+		CCNA_03611	0.17	-2.7
3,765,516	-		CCNA_03611	0.17	-3.4
3,765,516	-		CCNA_03611	0.17	-2.2
3,765,525	+		CCNA_03611	0.18	-2.1
3,765,527	+		CCNA_03611	0.18	-2.8
3,765,535	-		CCNA_03611	0.18	-1.1
3,765,565	+		CCNA_03611	0.20	-1.8
3,765,579	-		CCNA_03611	0.21	-0.5
3,765,620	+		CCNA_03611	0.23	-2.0
3,765,625	+		CCNA_03611	0.23	-1.1
3,765,636	-		CCNA_03611	0.24	-3.5
3,765,651	+		CCNA_03611	0.25	-1.1
3,765,665	-		CCNA_03611	0.25	-3.5
3,765,682	+		CCNA_03611	0.26	-1.4
3,765,717	+		CCNA_03611	0.28	-2.7
3,765,727	+		CCNA_03611	0.29	+0.5
3,765,792	-		CCNA_03611	0.32	-3.6
3,765,850	+		CCNA_03611	0.36	-1.8
3,765,871	-		CCNA_03611	0.37	-2.8
3,765,886	-		CCNA_03611	0.38	-3.7
3,765,890	-		CCNA_03611	0.38	-2.6
3,765,932	+		CCNA_03611	0.40	-2.0
3,765,981	+		CCNA_03611	0.43	+2.0
3,766,001	+		CCNA_03611	0.44	+0.5
3,766,008	+		CCNA_03611	0.44	-0.5
3,766,009	-		CCNA_03611	0.44	-1.5
3,766,009	-		CCNA_03611	0.44	+0.5
3,766,015	+		CCNA_03611	0.45	-1.4
3,766,016	-		CCNA_03611	0.45	-3.6
3,766,025	+		CCNA_03611	0.45	-2.4
3,766,031	-		CCNA_03611	0.46	-3.1
3,766,043	+		CCNA_03611	0.46	-0.3
3,766,051	-				-2.0
3,766,051	-		CCNA_03611	0.47	-3.0
3,766,051	-		CCNA_03611	0.47	-3.9
3,766,051	-		CCNA_03611	0.47	-3.0
3,766,051	-		CCNA_03611	0.47	-1.4
3,766,051	-		CCNA_03611	0.47	-3.2
3,766,058	+		CCNA_03611	0.47	+0.0
3,766,066	-		CCNA_03611	0.48	-2.2
3,766,066	-		CCNA_03611	0.48	-1.3
3,766,078	-		CCNA_03611	0.48	-2.7
3,766,148	+		CCNA_03611	0.52	-2.4
3,766,155	+		CCNA_03611	0.53	-3.0
3,766,155	+		CCNA_03611	0.53	-1.4
3,766,163	-		CCNA_03611	0.53	-4.0
3,766,163	-		CCNA_03611	0.53	-2.4
3,766,163	-		CCNA_03611	0.53	-2.7
3,766,163	-		CCNA_03611	0.53	-3.0