Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03074

Experiment: PYE 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 58 days
3,223,222	+		CCNA_03072	0.51	-1.4
3,223,267	-		CCNA_03072	0.58	+2.3
3,223,388	+		CCNA_03072	0.75	-2.1
3,223,406	-		CCNA_03072	0.77	+2.3
3,223,414	+		CCNA_03072	0.79	-2.0
3,223,422	+		CCNA_03072	0.80	-3.3
3,223,422	+		CCNA_03072	0.80	-0.7
3,223,488	+		CCNA_03072	0.89	-0.3
3,223,508	+				-1.7
3,223,515	-				-1.4
3,223,537	+				-0.6
3,223,578	+				+0.7
3,223,578	+				-1.4
3,223,578	+				-1.8
3,223,578	+				-1.6
3,223,578	+				-0.2
3,223,578	+				-1.7
3,223,586	-				+1.0
3,223,639	+				-1.6
3,223,647	-				-2.5
3,223,668	-				+2.3
3,223,668	-				-2.2
3,223,675	+				+1.7
3,223,690	-				-0.6
3,223,729	+		CCNA_03073	0.17	-1.8
3,223,734	+		CCNA_03073	0.18	-0.8
3,223,734	+		CCNA_03073	0.18	+0.3
3,223,734	+		CCNA_03073	0.18	-1.0
3,223,737	-		CCNA_03073	0.18	-0.8
3,223,741	+		CCNA_03073	0.19	-0.7
3,223,742	-		CCNA_03073	0.19	+0.3
3,223,742	-		CCNA_03073	0.19	-1.9
3,223,742	-		CCNA_03073	0.19	-2.0
3,223,742	-		CCNA_03073	0.19	-1.1
3,223,742	-		CCNA_03073	0.19	+0.2
3,223,742	-		CCNA_03073	0.19	+0.0
3,223,742	-		CCNA_03073	0.19	-0.4
3,223,791	+		CCNA_03073	0.28	-1.4
3,223,794	-		CCNA_03073	0.29	+0.0
3,223,840	+		CCNA_03073	0.38	-1.1
3,223,850	+		CCNA_03073	0.40	+0.4
3,223,875	+		CCNA_03073	0.44	-0.6
3,223,893	-		CCNA_03073	0.48	-2.4
3,223,924	-		CCNA_03073	0.54	+0.9
3,223,932	+		CCNA_03073	0.55	-1.0
3,223,941	-		CCNA_03073	0.57	-0.8
3,223,977	-		CCNA_03073	0.64	+1.3
3,224,001	+		CCNA_03073	0.68	-2.0
3,224,009	-		CCNA_03073	0.70	-2.6
3,224,029	-		CCNA_03073	0.74	-1.5
3,224,055	+		CCNA_03073	0.79	-0.6
3,224,071	+		CCNA_03073	0.82	-2.5
3,224,074	+		CCNA_03073	0.82	+1.3
3,224,113	+		CCNA_03073	0.90	-1.0
3,224,121	-				-2.0
3,224,126	-				-3.4
3,224,131	+				+0.5
3,224,131	+				-0.9
3,224,146	+				-0.3
3,224,154	-				-1.0
3,224,163	-				-0.6
3,224,200	+				+1.3
3,224,283	-		CCNA_03074	0.16	-0.5
3,224,293	+		CCNA_03074	0.18	-0.2
3,224,301	-		CCNA_03074	0.19	-0.3
3,224,325	-		CCNA_03074	0.22	-1.6
3,224,341	+		CCNA_03074	0.24	+0.3
3,224,349	-		CCNA_03074	0.25	-2.1
3,224,362	+		CCNA_03074	0.27	+1.0
3,224,368	-		CCNA_03074	0.28	-1.8
3,224,415	-		CCNA_03074	0.34	-1.7
3,224,415	-		CCNA_03074	0.34	-2.7
3,224,438	-		CCNA_03074	0.38	+0.7
3,224,447	-		CCNA_03074	0.39	-1.5
3,224,494	-		CCNA_03074	0.45	-1.9
3,224,514	-		CCNA_03074	0.48	-0.4
3,224,543	+		CCNA_03074	0.52	+1.3
3,224,543	+		CCNA_03074	0.52	-2.0
3,224,543	+		CCNA_03074	0.52	-0.3
3,224,543	+		CCNA_03074	0.52	-0.8
3,224,543	+		CCNA_03074	0.52	-0.8
3,224,543	+		CCNA_03074	0.52	-0.7
3,224,543	+		CCNA_03074	0.52	-0.9
3,224,551	-				+0.0
3,224,551	-		CCNA_03074	0.53	-1.4
3,224,551	-		CCNA_03074	0.53	-1.5
3,224,593	-		CCNA_03074	0.59	-0.7
3,224,606	-		CCNA_03074	0.61	-0.3
3,224,641	-		CCNA_03074	0.66	+0.3
3,224,646	+		CCNA_03074	0.66	-2.8
3,224,646	+		CCNA_03074	0.66	-2.1
3,224,646	+		CCNA_03074	0.66	+0.0
3,224,654	-		CCNA_03074	0.67	-0.7
3,224,706	-		CCNA_03074	0.75	+0.1
3,224,715	+		CCNA_03074	0.76	-0.3
3,224,723	-		CCNA_03074	0.77	-3.7
3,224,754	+		CCNA_03074	0.81	-3.0
3,224,754	+		CCNA_03074	0.81	-3.2
3,224,762	-		CCNA_03074	0.82	-2.1
3,224,769	+		CCNA_03074	0.83	-2.0
3,224,775	+		CCNA_03074	0.84	-1.3
3,224,799	+		CCNA_03074	0.88	-1.2
3,224,809	+		CCNA_03074	0.89	-3.1
3,224,810	+		CCNA_03074	0.89	-1.8
3,224,818	-				+2.3
3,224,818	-				-2.0
3,224,818	-				-2.1
3,224,819	+				+2.3
3,224,876	-				-1.1
3,224,881	-				-2.5
3,224,901	+				-0.8
3,224,903	+				+1.3
3,224,903	+				-2.5
3,224,909	-				-1.3
3,224,972	+		CCNA_03075	0.16	-1.6
3,224,972	+		CCNA_03075	0.16	-2.3
3,225,071	+		CCNA_03075	0.34	-4.5
3,225,079	-		CCNA_03075	0.35	-0.7
3,225,084	-		CCNA_03075	0.36	+0.8
3,225,101	+		CCNA_03075	0.39	+2.7
3,225,101	+		CCNA_03075	0.39	+0.0
3,225,106	+		CCNA_03075	0.40	-0.9
3,225,138	-		CCNA_03075	0.46	-1.0
3,225,140	+		CCNA_03075	0.46	-2.5
3,225,143	-		CCNA_03075	0.47	-0.5
3,225,174	+		CCNA_03075	0.52	-1.6
3,225,178	+		CCNA_03075	0.53	-0.6
3,225,180	-		CCNA_03075	0.53	-0.4
3,225,206	+		CCNA_03075	0.58	-2.7
3,225,222	+		CCNA_03075	0.61	-1.9
3,225,235	-		CCNA_03075	0.63	-2.8
3,225,292	-		CCNA_03075	0.74	-2.9
3,225,306	-		CCNA_03075	0.76	+0.0
3,225,306	-		CCNA_03075	0.76	+0.3
3,225,306	-		CCNA_03075	0.76	-0.2
3,225,313	-		CCNA_03075	0.78	-2.0
3,225,320	+		CCNA_03075	0.79	-1.7
3,225,320	+		CCNA_03075	0.79	+0.0
3,225,375	+		CCNA_03075	0.89	-2.6
3,225,444	+				-2.1
3,225,454	+				-0.5
3,225,491	+				-0.5
3,225,496	+				+1.3
3,225,499	-				-0.1
3,225,499	-				-1.1
3,225,499	-				-2.3
3,225,514	+				-0.2
3,225,514	+				-1.4
3,225,514	+				-1.3
3,225,522	-				-0.3
3,225,522	-				+0.3
3,225,554	-				-0.1
3,225,583	+				-0.2
3,225,590	+				+2.6
3,225,590	+				+0.8
3,225,598	-				+0.0
3,225,598	-				+2.3
3,225,613	+				-3.2
3,225,613	+				-1.0
3,225,613	+				+0.7
3,225,657	-				+0.2
3,225,725	-				-0.3
3,225,727	+				-0.7
3,225,727	+				-0.2
3,225,727	+				-0.1
3,225,727	+				-1.5
3,225,735	-				-2.0
3,225,735	-				-0.3
3,225,735	-				-1.5
3,225,735	-				-2.6
3,225,762	-		CCNA_03076	0.10	-0.8
3,225,762	-		CCNA_03076	0.10	-2.1
3,225,784	+		CCNA_03076	0.11	-1.3
3,225,785	+		CCNA_03076	0.11	+0.0
3,225,785	+		CCNA_03076	0.11	-0.6
3,225,785	+		CCNA_03076	0.11	+1.3
3,225,791	+		CCNA_03076	0.12	+1.2
3,225,791	+		CCNA_03076	0.12	-0.3
3,225,792	+		CCNA_03076	0.12	+0.1
3,225,792	-		CCNA_03076	0.12	-1.5
3,225,793	-		CCNA_03076	0.12	+0.3
3,225,793	-		CCNA_03076	0.12	-1.4
3,225,803	+		CCNA_03076	0.12	-0.3
3,225,806	-		CCNA_03076	0.12	-2.1
3,225,810	-		CCNA_03076	0.12	+0.0
3,225,811	-		CCNA_03076	0.12	-0.4
3,225,811	-		CCNA_03076	0.12	+0.3
3,225,811	-		CCNA_03076	0.12	+2.3
3,225,833	+		CCNA_03076	0.13	-1.1
3,225,833	+		CCNA_03076	0.13	-1.0
3,225,833	+		CCNA_03076	0.13	+0.5
3,225,833	+		CCNA_03076	0.13	+0.5
3,225,833	+		CCNA_03076	0.13	-0.1
3,225,834	+		CCNA_03076	0.14	-0.3
3,225,834	+		CCNA_03076	0.14	-0.8
3,225,834	-		CCNA_03076	0.14	+0.1
3,225,838	+		CCNA_03076	0.14	+0.9
3,225,841	-		CCNA_03076	0.14	+0.1
3,225,841	-		CCNA_03076	0.14	+0.3
3,225,841	-		CCNA_03076	0.14	-2.8
3,225,852	+		CCNA_03076	0.14	-1.7
3,225,871	+		CCNA_03076	0.15	-0.5
3,225,879	-		CCNA_03076	0.16	+0.2