Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01242

Experiment: PYE 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 58 days
1,366,625	+				+0.5
1,366,657	-				-1.0
1,366,727	-				+0.5
1,366,744	+				-0.1
1,366,752	-				+0.7
1,366,752	-				+2.3
1,366,752	-				+0.9
1,366,752	-				+0.9
1,366,752	-				+1.4
1,366,752	-				+0.4
1,366,752	-				+0.8
1,366,762	-				+1.1
1,366,819	-				+0.5
1,366,899	+		CCNA_01241	0.20	-2.5
1,366,909	-		CCNA_01241	0.21	+2.2
1,366,913	+		CCNA_01241	0.22	-1.0
1,366,928	-		CCNA_01241	0.24	-0.5
1,366,939	+		CCNA_01241	0.26	+0.3
1,366,946	+		CCNA_01241	0.26	-0.3
1,367,021	-		CCNA_01241	0.37	-2.2
1,367,061	+		CCNA_01241	0.43	+0.9
1,367,069	-		CCNA_01241	0.44	-0.4
1,367,071	+		CCNA_01241	0.44	-0.6
1,367,094	+		CCNA_01241	0.47	-0.1
1,367,094	+		CCNA_01241	0.47	-0.1
1,367,094	+		CCNA_01241	0.47	+0.5
1,367,102	-		CCNA_01241	0.48	-0.3
1,367,102	-		CCNA_01241	0.48	+0.0
1,367,102	-		CCNA_01241	0.48	+0.2
1,367,102	-		CCNA_01241	0.48	-0.8
1,367,102	-		CCNA_01241	0.48	+0.6
1,367,102	-		CCNA_01241	0.48	+1.5
1,367,102	-		CCNA_01241	0.48	+0.2
1,367,102	-		CCNA_01241	0.48	+1.3
1,367,143	-		CCNA_01241	0.54	-0.0
1,367,151	-		CCNA_01241	0.55	+0.2
1,367,170	-		CCNA_01241	0.58	-0.3
1,367,179	+		CCNA_01241	0.59	+1.5
1,367,187	-		CCNA_01241	0.60	+0.2
1,367,187	-		CCNA_01241	0.60	+0.2
1,367,187	-		CCNA_01241	0.60	+0.2
1,367,195	+		CCNA_01241	0.61	-1.8
1,367,195	+		CCNA_01241	0.61	-1.9
1,367,195	+		CCNA_01241	0.61	+1.5
1,367,195	+		CCNA_01241	0.61	-0.1
1,367,195	+		CCNA_01241	0.61	-1.5
1,367,195	+		CCNA_01241	0.61	+0.3
1,367,195	+		CCNA_01241	0.61	-1.9
1,367,203	-		CCNA_01241	0.62	+1.1
1,367,203	-		CCNA_01241	0.62	-0.3
1,367,203	-		CCNA_01241	0.62	-0.6
1,367,203	-		CCNA_01241	0.62	-0.2
1,367,203	-		CCNA_01241	0.62	+0.2
1,367,203	-		CCNA_01241	0.62	+0.9
1,367,203	-		CCNA_01241	0.62	-0.8
1,367,218	-		CCNA_01241	0.64	-0.4
1,367,218	-		CCNA_01241	0.64	-1.7
1,367,269	+		CCNA_01241	0.72	+1.5
1,367,272	-		CCNA_01241	0.72	+0.2
1,367,283	+		CCNA_01241	0.74	-0.3
1,367,289	+		CCNA_01241	0.74	+0.5
1,367,294	+		CCNA_01241	0.75	+1.1
1,367,294	+		CCNA_01241	0.75	+0.0
1,367,302	-		CCNA_01241	0.76	-1.2
1,367,311	+		CCNA_01241	0.77	-0.2
1,367,311	+		CCNA_01241	0.77	+1.5
1,367,311	+		CCNA_01241	0.77	+0.0
1,367,311	+		CCNA_01241	0.77	+1.2
1,367,311	+		CCNA_01241	0.77	+0.1
1,367,333	+		CCNA_01241	0.80	-0.0
1,367,341	-		CCNA_01241	0.82	+2.0
1,367,379	+		CCNA_01241	0.87	-0.5
1,367,385	+		CCNA_01241	0.88	+0.4
1,367,398	+		CCNA_01241	0.90	+0.7
1,367,421	-				+0.6
1,367,439	-				-0.3
1,367,461	+				-0.9
1,367,478	+				+0.9
1,367,478	+				+1.4
1,367,486	-				+0.8
1,367,569	-				+1.4
1,367,572	+				+0.9
1,367,572	+				+3.5
1,367,582	+				-0.9
1,367,591	-				+1.5
1,367,604	+				+0.2
1,367,650	+				-2.2
1,367,651	-				-3.2
1,367,652	-				-5.5
1,367,658	-				-3.4
1,367,658	-				-2.8
1,367,658	-				-3.0
1,367,686	+				-2.0
1,367,726	-				-4.4
1,367,756	+				-2.1
1,367,764	+				+1.5
1,367,795	-		CCNA_01242	0.12	-4.7
1,367,829	-		CCNA_01242	0.14	-3.5
1,367,921	-		CCNA_01242	0.20	-5.8
1,367,928	-		CCNA_01242	0.20	-3.7
1,367,999	+		CCNA_01242	0.25	-4.8
1,368,011	+		CCNA_01242	0.25	-5.0
1,368,019	-		CCNA_01242	0.26	-4.0
1,368,019	-		CCNA_01242	0.26	-4.2
1,368,051	-		CCNA_01242	0.28	-1.9
1,368,079	+		CCNA_01242	0.30	-0.8
1,368,105	+		CCNA_01242	0.31	+2.5
1,368,133	+		CCNA_01242	0.33	-1.6
1,368,134	-		CCNA_01242	0.33	-5.3
1,368,139	-		CCNA_01242	0.33	-4.1
1,368,160	+		CCNA_01242	0.35	+2.5
1,368,178	-		CCNA_01242	0.36	-2.8
1,368,191	-		CCNA_01242	0.37	-3.2
1,368,216	+		CCNA_01242	0.38	-2.0
1,368,216	+		CCNA_01242	0.38	-2.9
1,368,216	+		CCNA_01242	0.38	-1.9
1,368,219	-		CCNA_01242	0.38	-4.6
1,368,224	-		CCNA_01242	0.39	-5.2
1,368,254	-		CCNA_01242	0.41	-2.2
1,368,256	+		CCNA_01242	0.41	-1.5
1,368,256	+		CCNA_01242	0.41	-2.3
1,368,261	+		CCNA_01242	0.41	-1.7
1,368,266	+		CCNA_01242	0.41	-3.7
1,368,297	-		CCNA_01242	0.43	-3.9
1,368,310	+		CCNA_01242	0.44	-2.5
1,368,313	-		CCNA_01242	0.44	-5.6
1,368,318	-		CCNA_01242	0.45	-1.8
1,368,318	-		CCNA_01242	0.45	-5.5
1,368,333	-		CCNA_01242	0.45	-2.0
1,368,380	-		CCNA_01242	0.48	-4.3
1,368,423	-		CCNA_01242	0.51	-3.7
1,368,436	-		CCNA_01242	0.52	-4.2
1,368,437	-		CCNA_01242	0.52	-5.2
1,368,460	+		CCNA_01242	0.53	-2.2
1,368,494	+		CCNA_01242	0.56	-2.0
1,368,520	+		CCNA_01242	0.57	-3.7
1,368,528	-		CCNA_01242	0.58	-4.2
1,368,547	+		CCNA_01242	0.59	-1.6
1,368,550	-		CCNA_01242	0.59	-4.9
1,368,550	-		CCNA_01242	0.59	-3.2
1,368,573	-		CCNA_01242	0.61	-4.4
1,368,581	-		CCNA_01242	0.61	-4.1
1,368,586	+		CCNA_01242	0.61	-4.8
1,368,613	+		CCNA_01242	0.63	-4.9
1,368,613	+		CCNA_01242	0.63	-2.3
1,368,627	+		CCNA_01242	0.64	-1.4
1,368,628	+		CCNA_01242	0.64	-4.1
1,368,661	+		CCNA_01242	0.66	-0.7
1,368,714	+		CCNA_01242	0.69	-0.1
1,368,738	+		CCNA_01242	0.71	-1.0
1,368,746	-		CCNA_01242	0.71	-4.3
1,368,799	+		CCNA_01242	0.75	-0.7
1,368,802	-		CCNA_01242	0.75	-4.4
1,368,807	-		CCNA_01242	0.75	-4.1
1,368,807	-		CCNA_01242	0.75	-5.5
1,368,807	-		CCNA_01242	0.75	-3.6
1,368,880	+		CCNA_01242	0.80	-3.5
1,368,897	+		CCNA_01242	0.81	-1.1
1,368,918	+		CCNA_01242	0.82	-0.5
1,368,918	+		CCNA_01242	0.82	+0.2
1,368,926	-		CCNA_01242	0.83	-3.8
1,368,926	-		CCNA_01242	0.83	-5.8
1,368,946	+		CCNA_01242	0.84	-3.4
1,368,946	+		CCNA_01242	0.84	+0.2
1,368,954	-		CCNA_01242	0.84	-3.1
1,368,959	-		CCNA_01242	0.85	-3.9
1,368,964	-		CCNA_01242	0.85	-2.5
1,368,969	-		CCNA_01242	0.85	-6.2
1,369,013	+		CCNA_01242	0.88	-2.6
1,369,035	+		CCNA_01242	0.89	-3.7
1,369,052	-				-2.6
1,369,075	-				-6.2
1,369,099	-				-4.5
1,369,100	-				-5.7
1,369,109	-				-5.5
1,369,119	-				-3.7
1,369,129	-				-3.6
1,369,134	-				-4.0
1,369,191	+				-5.0
1,369,202	+				-0.7
1,369,202	+				-4.8
1,369,223	+				-2.2
1,369,238	+				-2.9
1,369,251	-				-1.7
1,369,259	-				-4.8
1,369,262	+				-0.7
1,369,270	-				-2.8
1,369,275	+				-4.5
1,369,283	-				-4.5
1,369,320	+				+1.1
1,369,327	+				+2.1
1,369,335	-				-0.2
1,369,335	-				-0.2
1,369,335	-				-0.7
1,369,348	-				+0.0
1,369,374	-				-1.2
1,369,374	-				-1.7
1,369,395	+				+2.3
1,369,417	-				+1.0
1,369,432	-				+0.7
1,369,499	-				+0.1
1,369,508	-				-2.7
1,369,534	+				+0.0
1,369,544	+				+2.2
1,369,670	+		CCNA_01243	0.15	+1.2
1,369,681	+		CCNA_01243	0.15	+0.5
1,369,725	+		CCNA_01243	0.17	+2.5
1,369,725	+		CCNA_01243	0.17	-0.9
1,369,725	+		CCNA_01243	0.17	-0.7
1,369,725	+		CCNA_01243	0.17	-0.6
1,369,725	+		CCNA_01243	0.17	-2.9
1,369,725	+		CCNA_01243	0.17	-0.5
1,369,725	+		CCNA_01243	0.17	-0.1
1,369,733	-		CCNA_01243	0.17	+0.5
1,369,733	-		CCNA_01243	0.17	-0.1
1,369,733	-		CCNA_01243	0.17	+1.1
1,369,733	-		CCNA_01243	0.17	-0.8
1,369,752	+		CCNA_01243	0.18	-0.1
1,369,752	+		CCNA_01243	0.18	+2.1
1,369,760	-		CCNA_01243	0.19	-0.4
1,369,760	-		CCNA_01243	0.19	-1.4
1,369,760	-		CCNA_01243	0.19	+2.5
1,369,773	+		CCNA_01243	0.19	-0.5
1,369,812	+		CCNA_01243	0.21	+1.1
1,369,845	+		CCNA_01243	0.22	-0.3
1,369,912	+		CCNA_01243	0.25	+1.3
1,369,946	+		CCNA_01243	0.26	-0.4
1,369,966	+		CCNA_01243	0.27	+0.6
1,369,966	+		CCNA_01243	0.27	-1.2
1,370,020	+		CCNA_01243	0.29	+0.9
1,370,066	+		CCNA_01243	0.31	+1.8
1,370,071	-		CCNA_01243	0.31	-0.8
1,370,071	-		CCNA_01243	0.31	+0.9
1,370,096	-		CCNA_01243	0.32	+0.4
1,370,107	+		CCNA_01243	0.33	+0.8
1,370,107	+		CCNA_01243	0.33	-0.1
1,370,107	+		CCNA_01243	0.33	-0.7
1,370,115	-		CCNA_01243	0.33	+0.9
1,370,115	-		CCNA_01243	0.33	-2.4
1,370,158	+		CCNA_01243	0.35	-1.0
1,370,202	+		CCNA_01243	0.36	+0.6
1,370,202	+		CCNA_01243	0.36	-0.0