Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01152

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01151 and CCNA_01152 are separated by 10 nucleotidesCCNA_01152 and CCNA_01153 are separated by 1 nucleotides CCNA_01151: CCNA_01151 - DeoR-family transcriptional regulator, at 1,254,720 to 1,255,703 _01151 CCNA_01152: CCNA_01152 - external DNA uptake/catabolism protein, at 1,255,714 to 1,256,535 _01152 CCNA_01153: CCNA_01153 - chromate transport protein, at 1,256,537 to 1,257,817 _01153 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1254.810 kb on + strandat 1254.810 kb on + strandat 1254.827 kb on + strand, within CCNA_01151at 1254.832 kb on + strand, within CCNA_01151at 1254.832 kb on + strand, within CCNA_01151at 1254.832 kb on + strand, within CCNA_01151at 1254.854 kb on + strand, within CCNA_01151at 1254.901 kb on - strand, within CCNA_01151at 1254.919 kb on + strand, within CCNA_01151at 1254.924 kb on + strand, within CCNA_01151at 1254.960 kb on + strand, within CCNA_01151at 1255.015 kb on + strand, within CCNA_01151at 1255.028 kb on + strand, within CCNA_01151at 1255.029 kb on + strand, within CCNA_01151at 1255.069 kb on + strand, within CCNA_01151at 1255.104 kb on + strand, within CCNA_01151at 1255.105 kb on - strand, within CCNA_01151at 1255.109 kb on + strand, within CCNA_01151at 1255.117 kb on - strand, within CCNA_01151at 1255.141 kb on + strandat 1255.148 kb on - strand, within CCNA_01151at 1255.150 kb on + strand, within CCNA_01151at 1255.150 kb on - strand, within CCNA_01151at 1255.157 kb on + strand, within CCNA_01151at 1255.173 kb on + strand, within CCNA_01151at 1255.190 kb on + strand, within CCNA_01151at 1255.237 kb on + strand, within CCNA_01151at 1255.301 kb on + strand, within CCNA_01151at 1255.333 kb on + strand, within CCNA_01151at 1255.333 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.357 kb on + strand, within CCNA_01151at 1255.365 kb on - strand, within CCNA_01151at 1255.365 kb on - strand, within CCNA_01151at 1255.365 kb on - strand, within CCNA_01151at 1255.365 kb on - strand, within CCNA_01151at 1255.370 kb on + strand, within CCNA_01151at 1255.389 kb on + strand, within CCNA_01151at 1255.394 kb on + strand, within CCNA_01151at 1255.412 kb on - strand, within CCNA_01151at 1255.412 kb on - strand, within CCNA_01151at 1255.449 kb on + strand, within CCNA_01151at 1255.456 kb on - strand, within CCNA_01151at 1255.457 kb on - strand, within CCNA_01151at 1255.457 kb on - strand, within CCNA_01151at 1255.464 kb on - strand, within CCNA_01151at 1255.499 kb on - strand, within CCNA_01151at 1255.512 kb on + strand, within CCNA_01151at 1255.539 kb on - strand, within CCNA_01151at 1255.589 kb on + strand, within CCNA_01151at 1255.591 kb on + strand, within CCNA_01151at 1255.618 kb on - strandat 1255.641 kb on - strandat 1255.643 kb on - strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.659 kb on + strandat 1255.666 kb on - strandat 1255.670 kb on + strandat 1255.670 kb on + strandat 1255.710 kb on + strandat 1255.713 kb on - strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.785 kb on + strandat 1255.797 kb on + strand, within CCNA_01152at 1255.810 kb on - strand, within CCNA_01152at 1255.850 kb on + strand, within CCNA_01152at 1255.888 kb on - strand, within CCNA_01152at 1255.908 kb on - strand, within CCNA_01152at 1255.941 kb on + strand, within CCNA_01152at 1255.947 kb on - strand, within CCNA_01152at 1255.949 kb on - strand, within CCNA_01152at 1255.949 kb on - strand, within CCNA_01152at 1255.961 kb on + strand, within CCNA_01152at 1255.971 kb on + strand, within CCNA_01152at 1255.971 kb on + strand, within CCNA_01152at 1255.979 kb on - strand, within CCNA_01152at 1255.995 kb on + strand, within CCNA_01152at 1256.003 kb on - strand, within CCNA_01152at 1256.009 kb on + strand, within CCNA_01152at 1256.009 kb on + strand, within CCNA_01152at 1256.034 kb on + strand, within CCNA_01152at 1256.034 kb on + strand, within CCNA_01152at 1256.046 kb on + strand, within CCNA_01152at 1256.057 kb on + strand, within CCNA_01152at 1256.091 kb on + strand, within CCNA_01152at 1256.107 kb on - strand, within CCNA_01152at 1256.111 kb on + strand, within CCNA_01152at 1256.155 kb on + strand, within CCNA_01152at 1256.191 kb on - strand, within CCNA_01152at 1256.222 kb on + strand, within CCNA_01152at 1256.239 kb on + strand, within CCNA_01152at 1256.254 kb on + strand, within CCNA_01152at 1256.254 kb on + strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.262 kb on - strand, within CCNA_01152at 1256.281 kb on - strand, within CCNA_01152at 1256.286 kb on - strand, within CCNA_01152at 1256.315 kb on + strand, within CCNA_01152at 1256.323 kb on - strand, within CCNA_01152at 1256.337 kb on + strand, within CCNA_01152at 1256.457 kb on - strandat 1256.520 kb on + strandat 1256.534 kb on + strandat 1256.560 kb on + strandat 1256.580 kb on + strandat 1256.602 kb on - strandat 1256.602 kb on - strandat 1256.627 kb on + strandat 1256.637 kb on + strandat 1256.645 kb on - strandat 1256.645 kb on - strandat 1256.678 kb on + strand, within CCNA_01153at 1256.686 kb on - strand, within CCNA_01153at 1256.690 kb on + strand, within CCNA_01153at 1256.713 kb on + strand, within CCNA_01153at 1256.753 kb on - strand, within CCNA_01153at 1256.767 kb on + strand, within CCNA_01153at 1256.770 kb on - strand, within CCNA_01153at 1256.789 kb on + strand, within CCNA_01153at 1256.806 kb on + strand, within CCNA_01153at 1256.825 kb on - strand, within CCNA_01153at 1256.832 kb on + strand, within CCNA_01153at 1256.864 kb on + strand, within CCNA_01153at 1256.869 kb on + strand, within CCNA_01153at 1256.872 kb on - strand, within CCNA_01153at 1256.876 kb on - strand, within CCNA_01153at 1256.878 kb on + strand, within CCNA_01153at 1256.937 kb on - strand, within CCNA_01153at 1256.948 kb on - strand, within CCNA_01153at 1257.004 kb on + strand, within CCNA_01153at 1257.044 kb on + strand, within CCNA_01153at 1257.044 kb on + strand, within CCNA_01153at 1257.061 kb on - strand, within CCNA_01153at 1257.090 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.103 kb on + strand, within CCNA_01153at 1257.111 kb on - strand, within CCNA_01153at 1257.111 kb on - strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.128 kb on + strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.136 kb on - strand, within CCNA_01153at 1257.150 kb on + strand, within CCNA_01153at 1257.158 kb on - strand, within CCNA_01153at 1257.164 kb on + strand, within CCNA_01153at 1257.169 kb on + strand, within CCNA_01153at 1257.169 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.194 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.209 kb on + strand, within CCNA_01153at 1257.217 kb on - strand, within CCNA_01153at 1257.235 kb on + strand, within CCNA_01153at 1257.265 kb on + strand, within CCNA_01153at 1257.265 kb on + strand, within CCNA_01153at 1257.273 kb on - strand, within CCNA_01153at 1257.278 kb on - strand, within CCNA_01153at 1257.291 kb on + strand, within CCNA_01153at 1257.298 kb on - strand, within CCNA_01153at 1257.310 kb on - strand, within CCNA_01153at 1257.322 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.327 kb on + strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.335 kb on - strand, within CCNA_01153at 1257.337 kb on + strand, within CCNA_01153at 1257.397 kb on + strand, within CCNA_01153at 1257.397 kb on + strand, within CCNA_01153at 1257.431 kb on - strand, within CCNA_01153at 1257.493 kb on - strand, within CCNA_01153at 1257.532 kb on + strand, within CCNA_01153

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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1,254,810 + +0.8
1,254,810 + +0.6
1,254,827 + CCNA_01151 0.11 +1.0
1,254,832 + CCNA_01151 0.11 -0.2
1,254,832 + CCNA_01151 0.11 +0.7
1,254,832 + CCNA_01151 0.11 +0.8
1,254,854 + CCNA_01151 0.14 +1.5
1,254,901 - CCNA_01151 0.18 -1.1
1,254,919 + CCNA_01151 0.20 +0.1
1,254,924 + CCNA_01151 0.21 -0.4
1,254,960 + CCNA_01151 0.24 -0.2
1,255,015 + CCNA_01151 0.30 +1.0
1,255,028 + CCNA_01151 0.31 +0.8
1,255,029 + CCNA_01151 0.31 -0.8
1,255,069 + CCNA_01151 0.35 +0.1
1,255,104 + CCNA_01151 0.39 +0.7
1,255,105 - CCNA_01151 0.39 +0.3
1,255,109 + CCNA_01151 0.40 -1.9
1,255,117 - CCNA_01151 0.40 -2.4
1,255,141 + -0.6
1,255,148 - CCNA_01151 0.43 +0.2
1,255,150 + CCNA_01151 0.44 -0.1
1,255,150 - CCNA_01151 0.44 -0.7
1,255,157 + CCNA_01151 0.44 +0.1
1,255,173 + CCNA_01151 0.46 +1.3
1,255,190 + CCNA_01151 0.48 +0.6
1,255,237 + CCNA_01151 0.53 +1.1
1,255,301 + CCNA_01151 0.59 +0.7
1,255,333 + CCNA_01151 0.62 +0.0
1,255,333 + CCNA_01151 0.62 -3.6
1,255,357 + CCNA_01151 0.65 +0.9
1,255,357 + CCNA_01151 0.65 -0.7
1,255,357 + CCNA_01151 0.65 +1.9
1,255,357 + CCNA_01151 0.65 +0.5
1,255,357 + CCNA_01151 0.65 -0.7
1,255,357 + CCNA_01151 0.65 -0.7
1,255,365 - CCNA_01151 0.66 -0.4
1,255,365 - CCNA_01151 0.66 -0.7
1,255,365 - CCNA_01151 0.66 -0.3
1,255,365 - CCNA_01151 0.66 +0.2
1,255,370 + CCNA_01151 0.66 +3.8
1,255,389 + CCNA_01151 0.68 +1.1
1,255,394 + CCNA_01151 0.68 +1.1
1,255,412 - CCNA_01151 0.70 -0.5
1,255,412 - CCNA_01151 0.70 +0.7
1,255,449 + CCNA_01151 0.74 +1.0
1,255,456 - CCNA_01151 0.75 +2.7
1,255,457 - CCNA_01151 0.75 +0.2
1,255,457 - CCNA_01151 0.75 -1.1
1,255,464 - CCNA_01151 0.76 -1.6
1,255,499 - CCNA_01151 0.79 +2.1
1,255,512 + CCNA_01151 0.80 -0.2
1,255,539 - CCNA_01151 0.83 -0.1
1,255,589 + CCNA_01151 0.88 -1.4
1,255,591 + CCNA_01151 0.89 -0.0
1,255,618 - -1.0
1,255,641 - +0.3
1,255,643 - +1.5
1,255,659 + -0.3
1,255,659 + +0.4
1,255,659 + -1.1
1,255,659 + -0.5
1,255,666 - +0.5
1,255,670 + -1.8
1,255,670 + +0.5
1,255,710 + -0.1
1,255,713 - -0.7
1,255,785 + -2.8
1,255,785 + +1.0
1,255,785 + +0.3
1,255,785 + -0.4
1,255,797 + CCNA_01152 0.10 +2.5
1,255,810 - CCNA_01152 0.12 +0.2
1,255,850 + CCNA_01152 0.17 -1.9
1,255,888 - CCNA_01152 0.21 +0.2
1,255,908 - CCNA_01152 0.24 -1.9
1,255,941 + CCNA_01152 0.28 -1.1
1,255,947 - CCNA_01152 0.28 -1.6
1,255,949 - CCNA_01152 0.29 -2.8
1,255,949 - CCNA_01152 0.29 -1.0
1,255,961 + CCNA_01152 0.30 -0.4
1,255,971 + CCNA_01152 0.31 -0.3
1,255,971 + CCNA_01152 0.31 -1.8
1,255,979 - CCNA_01152 0.32 -1.3
1,255,995 + CCNA_01152 0.34 +0.3
1,256,003 - CCNA_01152 0.35 +1.5
1,256,009 + CCNA_01152 0.36 -0.3
1,256,009 + CCNA_01152 0.36 -0.7
1,256,034 + CCNA_01152 0.39 -1.4
1,256,034 + CCNA_01152 0.39 -2.5
1,256,046 + CCNA_01152 0.40 +3.6
1,256,057 + CCNA_01152 0.42 -2.1
1,256,091 + CCNA_01152 0.46 -2.0
1,256,107 - CCNA_01152 0.48 +2.5
1,256,111 + CCNA_01152 0.48 -1.8
1,256,155 + CCNA_01152 0.54 +1.5
1,256,191 - CCNA_01152 0.58 -1.7
1,256,222 + CCNA_01152 0.62 +0.1
1,256,239 + CCNA_01152 0.64 -0.8
1,256,254 + CCNA_01152 0.66 +1.7
1,256,254 + CCNA_01152 0.66 -0.8
1,256,262 - CCNA_01152 0.67 -2.1
1,256,262 - CCNA_01152 0.67 +1.5
1,256,262 - CCNA_01152 0.67 +1.5
1,256,281 - CCNA_01152 0.69 +0.9
1,256,286 - CCNA_01152 0.70 +0.2
1,256,315 + CCNA_01152 0.73 +0.7
1,256,323 - CCNA_01152 0.74 -2.5
1,256,337 + CCNA_01152 0.76 -1.3
1,256,457 - +0.5
1,256,520 + -0.4
1,256,534 + +0.8
1,256,560 + +0.9
1,256,580 + -0.4
1,256,602 - -1.3
1,256,602 - -1.2
1,256,627 + +0.2
1,256,637 + +0.4
1,256,645 - -1.1
1,256,645 - -2.0
1,256,678 + CCNA_01153 0.11 -2.0
1,256,686 - CCNA_01153 0.12 +0.5
1,256,690 + CCNA_01153 0.12 -0.2
1,256,713 + CCNA_01153 0.14 -0.5
1,256,753 - CCNA_01153 0.17 +2.5
1,256,767 + CCNA_01153 0.18 -0.7
1,256,770 - CCNA_01153 0.18 +2.5
1,256,789 + CCNA_01153 0.20 +0.2
1,256,806 + CCNA_01153 0.21 +0.4
1,256,825 - CCNA_01153 0.22 +0.7
1,256,832 + CCNA_01153 0.23 +1.2
1,256,864 + CCNA_01153 0.26 +1.1
1,256,869 + CCNA_01153 0.26 +0.5
1,256,872 - CCNA_01153 0.26 +2.5
1,256,876 - CCNA_01153 0.26 +0.5
1,256,878 + CCNA_01153 0.27 +0.4
1,256,937 - CCNA_01153 0.31 +2.5
1,256,948 - CCNA_01153 0.32 -1.5
1,257,004 + CCNA_01153 0.36 +1.2
1,257,044 + CCNA_01153 0.40 +0.2
1,257,044 + CCNA_01153 0.40 +1.0
1,257,061 - CCNA_01153 0.41 -1.8
1,257,090 + CCNA_01153 0.43 -1.3
1,257,103 + CCNA_01153 0.44 +1.7
1,257,103 + CCNA_01153 0.44 -0.2
1,257,103 + CCNA_01153 0.44 -0.6
1,257,111 - CCNA_01153 0.45 -1.3
1,257,111 - CCNA_01153 0.45 -2.1
1,257,128 + CCNA_01153 0.46 -0.8
1,257,128 + CCNA_01153 0.46 +1.0
1,257,128 + CCNA_01153 0.46 +0.4
1,257,128 + CCNA_01153 0.46 +0.5
1,257,128 + CCNA_01153 0.46 +5.1
1,257,128 + CCNA_01153 0.46 -0.1
1,257,128 + CCNA_01153 0.46 +0.1
1,257,128 + CCNA_01153 0.46 -0.5
1,257,128 + CCNA_01153 0.46 +0.3
1,257,128 + CCNA_01153 0.46 +0.1
1,257,136 - CCNA_01153 0.47 -1.9
1,257,136 - CCNA_01153 0.47 -0.8
1,257,136 - CCNA_01153 0.47 +0.2
1,257,136 - CCNA_01153 0.47 -1.7
1,257,150 + CCNA_01153 0.48 -0.0
1,257,158 - CCNA_01153 0.48 +2.5
1,257,164 + CCNA_01153 0.49 -0.6
1,257,169 + CCNA_01153 0.49 +0.1
1,257,169 + CCNA_01153 0.49 -0.0
1,257,194 + CCNA_01153 0.51 -0.3
1,257,194 + CCNA_01153 0.51 +0.7
1,257,194 + CCNA_01153 0.51 +0.7
1,257,194 + CCNA_01153 0.51 -0.2
1,257,194 + CCNA_01153 0.51 +1.1
1,257,209 + CCNA_01153 0.52 -1.0
1,257,209 + CCNA_01153 0.52 +1.6
1,257,209 + CCNA_01153 0.52 +0.2
1,257,217 - CCNA_01153 0.53 -0.8
1,257,235 + CCNA_01153 0.54 +1.4
1,257,265 + CCNA_01153 0.57 +0.7
1,257,265 + CCNA_01153 0.57 +2.2
1,257,273 - CCNA_01153 0.57 -1.0
1,257,278 - CCNA_01153 0.58 -2.2
1,257,291 + CCNA_01153 0.59 -0.4
1,257,298 - CCNA_01153 0.59 -1.8
1,257,310 - CCNA_01153 0.60 +2.3
1,257,322 + CCNA_01153 0.61 -0.3
1,257,327 + CCNA_01153 0.62 +1.0
1,257,327 + CCNA_01153 0.62 +0.2
1,257,327 + CCNA_01153 0.62 +0.4
1,257,327 + CCNA_01153 0.62 +1.1
1,257,327 + CCNA_01153 0.62 +0.7
1,257,327 + CCNA_01153 0.62 +0.5
1,257,327 + CCNA_01153 0.62 +1.2
1,257,327 + CCNA_01153 0.62 +0.6
1,257,327 + CCNA_01153 0.62 -0.2
1,257,335 - CCNA_01153 0.62 +2.5
1,257,335 - CCNA_01153 0.62 +1.4
1,257,335 - CCNA_01153 0.62 -0.4
1,257,335 - CCNA_01153 0.62 -1.1
1,257,335 - CCNA_01153 0.62 -1.6
1,257,335 - CCNA_01153 0.62 +2.5
1,257,337 + CCNA_01153 0.62 +0.0
1,257,397 + CCNA_01153 0.67 -1.0
1,257,397 + CCNA_01153 0.67 -0.3
1,257,431 - CCNA_01153 0.70 -0.2
1,257,493 - CCNA_01153 0.75 +0.2
1,257,532 + CCNA_01153 0.78 -0.4

Or see this region's nucleotide sequence