Experiment: PYE 4C survival rep2 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00615 and CCNA_03924 are separated by 96 nucleotides CCNA_03924 and CCNA_00616 are separated by 125 nucleotides CCNA_00616 and CCNA_00617 are separated by 118 nucleotides
CCNA_00615: CCNA_00615 - TonB-dependent receptor, at 656,945 to 659,863
_00615
CCNA_03924: CCNA_03924 - hypothetical protein, at 659,960 to 660,031
_03924
CCNA_00616: CCNA_00616 - Lrp-family transcriptional regulator, at 660,157 to 660,612
_00616
CCNA_00617: CCNA_00617 - arginine N-succinyltransferase, beta chain, at 660,731 to 661,774
_00617
Position (kb) 660
661 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 659.160 kb on + strand, within CCNA_00615 at 659.186 kb on + strand, within CCNA_00615 at 659.194 kb on - strand, within CCNA_00615 at 659.211 kb on - strand, within CCNA_00615 at 659.240 kb on + strand, within CCNA_00615 at 659.245 kb on + strand, within CCNA_00615 at 659.248 kb on - strand, within CCNA_00615 at 659.256 kb on + strand, within CCNA_00615 at 659.297 kb on - strand, within CCNA_00615 at 659.299 kb on - strand, within CCNA_00615 at 659.345 kb on + strand, within CCNA_00615 at 659.353 kb on + strand, within CCNA_00615 at 659.353 kb on - strand, within CCNA_00615 at 659.366 kb on + strand, within CCNA_00615 at 659.369 kb on - strand, within CCNA_00615 at 659.371 kb on + strand, within CCNA_00615 at 659.374 kb on - strand, within CCNA_00615 at 659.374 kb on - strand, within CCNA_00615 at 659.397 kb on - strand, within CCNA_00615 at 659.434 kb on + strand, within CCNA_00615 at 659.526 kb on + strand, within CCNA_00615 at 659.553 kb on - strand, within CCNA_00615 at 659.564 kb on + strand, within CCNA_00615 at 659.564 kb on + strand at 659.564 kb on + strand, within CCNA_00615 at 659.572 kb on - strand at 659.572 kb on - strand at 659.574 kb on + strand at 659.579 kb on + strand at 659.592 kb on + strand at 659.600 kb on - strand at 659.615 kb on + strand at 659.630 kb on - strand at 659.695 kb on + strand at 659.695 kb on + strand at 659.695 kb on + strand at 659.703 kb on - strand at 659.718 kb on + strand at 659.740 kb on - strand at 659.740 kb on - strand at 659.740 kb on - strand at 659.756 kb on + strand at 659.805 kb on + strand at 659.805 kb on + strand at 659.813 kb on - strand at 659.819 kb on + strand at 659.837 kb on - strand at 659.853 kb on + strand at 659.853 kb on + strand at 659.861 kb on - strand at 659.861 kb on - strand at 659.861 kb on - strand at 659.878 kb on + strand at 659.886 kb on - strand at 659.889 kb on + strand at 659.889 kb on + strand at 659.889 kb on + strand at 659.897 kb on - strand at 659.897 kb on - strand at 659.898 kb on + strand at 659.899 kb on + strand at 659.899 kb on + strand at 659.907 kb on - strand at 659.907 kb on - strand at 659.907 kb on - strand at 659.907 kb on - strand at 659.907 kb on - strand at 659.910 kb on + strand at 659.910 kb on + strand at 659.918 kb on - strand at 659.918 kb on - strand at 659.918 kb on - strand at 659.987 kb on + strand, within CCNA_03924 at 659.987 kb on + strand, within CCNA_03924 at 659.987 kb on + strand, within CCNA_03924 at 659.987 kb on + strand, within CCNA_03924 at 659.987 kb on + strand, within CCNA_03924 at 659.987 kb on + strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 659.995 kb on - strand, within CCNA_03924 at 660.016 kb on + strand, within CCNA_03924 at 660.026 kb on + strand at 660.034 kb on - strand at 660.036 kb on - strand at 660.072 kb on - strand at 660.107 kb on + strand at 660.155 kb on + strand at 660.162 kb on + strand at 660.179 kb on + strand at 660.186 kb on - strand at 660.187 kb on - strand at 660.273 kb on - strand, within CCNA_00616 at 660.288 kb on + strand, within CCNA_00616 at 660.291 kb on + strand, within CCNA_00616 at 660.311 kb on + strand, within CCNA_00616 at 660.324 kb on - strand, within CCNA_00616 at 660.327 kb on + strand, within CCNA_00616 at 660.359 kb on + strand, within CCNA_00616 at 660.369 kb on + strand, within CCNA_00616 at 660.412 kb on - strand, within CCNA_00616 at 660.429 kb on + strand, within CCNA_00616 at 660.453 kb on + strand, within CCNA_00616 at 660.468 kb on + strand, within CCNA_00616 at 660.476 kb on + strand, within CCNA_00616 at 660.478 kb on - strand, within CCNA_00616 at 660.482 kb on + strand, within CCNA_00616 at 660.483 kb on - strand, within CCNA_00616 at 660.484 kb on - strand, within CCNA_00616 at 660.490 kb on - strand, within CCNA_00616 at 660.496 kb on + strand, within CCNA_00616 at 660.509 kb on - strand, within CCNA_00616 at 660.553 kb on + strand, within CCNA_00616 at 660.553 kb on + strand, within CCNA_00616 at 660.561 kb on - strand, within CCNA_00616 at 660.612 kb on - strand at 660.709 kb on - strand at 660.771 kb on - strand at 660.773 kb on + strand at 660.814 kb on + strand at 660.820 kb on - strand at 660.826 kb on - strand at 660.842 kb on + strand, within CCNA_00617 at 660.875 kb on + strand, within CCNA_00617 at 660.875 kb on + strand, within CCNA_00617 at 660.894 kb on + strand, within CCNA_00617 at 660.904 kb on + strand, within CCNA_00617 at 660.904 kb on + strand, within CCNA_00617 at 660.904 kb on + strand, within CCNA_00617 at 660.907 kb on - strand, within CCNA_00617 at 660.938 kb on - strand, within CCNA_00617 at 660.977 kb on - strand, within CCNA_00617 at 661.003 kb on + strand, within CCNA_00617 at 661.003 kb on + strand, within CCNA_00617 at 661.011 kb on - strand, within CCNA_00617 at 661.013 kb on + strand, within CCNA_00617 at 661.019 kb on + strand, within CCNA_00617 at 661.021 kb on + strand, within CCNA_00617 at 661.021 kb on - strand, within CCNA_00617 at 661.022 kb on + strand, within CCNA_00617 at 661.030 kb on - strand, within CCNA_00617 at 661.030 kb on - strand, within CCNA_00617 at 661.043 kb on + strand, within CCNA_00617 at 661.077 kb on - strand, within CCNA_00617 at 661.086 kb on + strand, within CCNA_00617 at 661.094 kb on - strand, within CCNA_00617 at 661.103 kb on + strand, within CCNA_00617 at 661.123 kb on + strand, within CCNA_00617 at 661.144 kb on - strand, within CCNA_00617 at 661.176 kb on + strand, within CCNA_00617 at 661.212 kb on - strand, within CCNA_00617 at 661.225 kb on - strand, within CCNA_00617 at 661.245 kb on + strand, within CCNA_00617 at 661.248 kb on - strand, within CCNA_00617 at 661.252 kb on + strand, within CCNA_00617 at 661.252 kb on + strand, within CCNA_00617 at 661.252 kb on + strand, within CCNA_00617 at 661.252 kb on + strand, within CCNA_00617 at 661.252 kb on - strand, within CCNA_00617 at 661.260 kb on - strand, within CCNA_00617 at 661.260 kb on - strand, within CCNA_00617 at 661.260 kb on - strand, within CCNA_00617 at 661.260 kb on - strand, within CCNA_00617 at 661.270 kb on - strand, within CCNA_00617 at 661.288 kb on + strand, within CCNA_00617 at 661.288 kb on + strand, within CCNA_00617 at 661.288 kb on + strand, within CCNA_00617 at 661.293 kb on + strand, within CCNA_00617 at 661.296 kb on - strand, within CCNA_00617 at 661.296 kb on - strand, within CCNA_00617 at 661.382 kb on - strand, within CCNA_00617 at 661.402 kb on - strand, within CCNA_00617 at 661.441 kb on + strand, within CCNA_00617 at 661.449 kb on - strand, within CCNA_00617 at 661.453 kb on + strand, within CCNA_00617 at 661.483 kb on + strand, within CCNA_00617 at 661.514 kb on + strand, within CCNA_00617 at 661.541 kb on - strand, within CCNA_00617 at 661.592 kb on + strand, within CCNA_00617 at 661.592 kb on + strand, within CCNA_00617 at 661.600 kb on - strand, within CCNA_00617 at 661.600 kb on - strand, within CCNA_00617
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days remove 659,160 + CCNA_00615 0.76 +0.3 659,186 + CCNA_00615 0.77 -0.9 659,194 - CCNA_00615 0.77 -0.0 659,211 - CCNA_00615 0.78 +0.3 659,240 + CCNA_00615 0.79 +2.5 659,245 + CCNA_00615 0.79 +0.2 659,248 - CCNA_00615 0.79 -0.6 659,256 + CCNA_00615 0.79 +0.2 659,297 - CCNA_00615 0.81 -0.3 659,299 - CCNA_00615 0.81 +1.0 659,345 + CCNA_00615 0.82 -1.0 659,353 + CCNA_00615 0.82 -0.7 659,353 - CCNA_00615 0.82 -0.8 659,366 + CCNA_00615 0.83 -2.8 659,369 - CCNA_00615 0.83 +0.5 659,371 + CCNA_00615 0.83 +2.1 659,374 - CCNA_00615 0.83 -0.1 659,374 - CCNA_00615 0.83 +0.9 659,397 - CCNA_00615 0.84 +1.0 659,434 + CCNA_00615 0.85 +2.5 659,526 + CCNA_00615 0.88 +0.5 659,553 - CCNA_00615 0.89 +0.3 659,564 + CCNA_00615 0.90 +1.1 659,564 + +1.0 659,564 + CCNA_00615 0.90 -0.0 659,572 - -2.2 659,572 - +1.0 659,574 + +1.1 659,579 + +0.7 659,592 + +1.5 659,600 - -1.5 659,615 + +1.5 659,630 - +0.1 659,695 + -0.5 659,695 + -1.3 659,695 + -0.3 659,703 - -0.5 659,718 + -0.8 659,740 - -0.0 659,740 - -2.3 659,740 - +0.5 659,756 + +2.1 659,805 + -1.5 659,805 + +3.1 659,813 - -1.7 659,819 + +0.4 659,837 - -0.4 659,853 + -0.5 659,853 + -0.3 659,861 - +1.5 659,861 - +0.8 659,861 - -0.3 659,878 + -0.0 659,886 - +0.8 659,889 + -1.7 659,889 + +0.5 659,889 + +1.5 659,897 - +0.5 659,897 - +0.8 659,898 + -1.3 659,899 + +1.0 659,899 + +1.5 659,907 - +1.1 659,907 - +1.4 659,907 - +0.6 659,907 - -0.1 659,907 - +1.1 659,910 + -1.0 659,910 + -1.5 659,918 - +0.5 659,918 - +0.9 659,918 - +1.3 659,987 + CCNA_03924 0.38 -0.0 659,987 + CCNA_03924 0.38 +2.5 659,987 + CCNA_03924 0.38 +1.5 659,987 + CCNA_03924 0.38 -2.9 659,987 + CCNA_03924 0.38 +1.5 659,987 + CCNA_03924 0.38 +1.0 659,995 - CCNA_03924 0.49 +0.0 659,995 - CCNA_03924 0.49 +0.6 659,995 - CCNA_03924 0.49 -1.2 659,995 - CCNA_03924 0.49 +0.7 659,995 - CCNA_03924 0.49 +0.9 659,995 - CCNA_03924 0.49 +0.4 659,995 - CCNA_03924 0.49 -0.3 659,995 - CCNA_03924 0.49 +0.1 659,995 - CCNA_03924 0.49 +0.9 659,995 - CCNA_03924 0.49 +0.8 659,995 - CCNA_03924 0.49 +1.1 659,995 - CCNA_03924 0.49 -1.3 660,016 + CCNA_03924 0.78 +3.0 660,026 + +1.4 660,034 - +1.2 660,036 - -0.3 660,072 - +0.9 660,107 + -2.0 660,155 + +0.5 660,162 + +1.0 660,179 + -1.3 660,186 - +0.4 660,187 - +0.2 660,273 - CCNA_00616 0.25 +1.5 660,288 + CCNA_00616 0.29 +2.5 660,291 + CCNA_00616 0.29 -0.6 660,311 + CCNA_00616 0.34 -0.5 660,324 - CCNA_00616 0.37 -2.2 660,327 + CCNA_00616 0.37 +0.2 660,359 + CCNA_00616 0.44 +0.2 660,369 + CCNA_00616 0.46 +2.5 660,412 - CCNA_00616 0.56 +1.2 660,429 + CCNA_00616 0.60 -1.2 660,453 + CCNA_00616 0.65 +1.5 660,468 + CCNA_00616 0.68 +0.5 660,476 + CCNA_00616 0.70 -2.4 660,478 - CCNA_00616 0.70 -2.1 660,482 + CCNA_00616 0.71 -1.3 660,483 - CCNA_00616 0.71 -2.3 660,484 - CCNA_00616 0.72 -1.5 660,490 - CCNA_00616 0.73 -1.1 660,496 + CCNA_00616 0.74 -1.3 660,509 - CCNA_00616 0.77 -2.0 660,553 + CCNA_00616 0.87 -1.4 660,553 + CCNA_00616 0.87 -1.3 660,561 - CCNA_00616 0.89 -2.6 660,612 - -1.2 660,709 - +2.2 660,771 - -0.8 660,773 + -0.6 660,814 + -0.4 660,820 - +2.5 660,826 - -2.3 660,842 + CCNA_00617 0.11 +0.2 660,875 + CCNA_00617 0.14 -1.0 660,875 + CCNA_00617 0.14 -0.4 660,894 + CCNA_00617 0.16 -2.2 660,904 + CCNA_00617 0.17 -1.3 660,904 + CCNA_00617 0.17 -1.0 660,904 + CCNA_00617 0.17 -1.5 660,907 - CCNA_00617 0.17 +1.0 660,938 - CCNA_00617 0.20 +1.0 660,977 - CCNA_00617 0.24 -3.7 661,003 + CCNA_00617 0.26 -0.5 661,003 + CCNA_00617 0.26 -1.5 661,011 - CCNA_00617 0.27 -1.6 661,013 + CCNA_00617 0.27 +0.4 661,019 + CCNA_00617 0.28 +1.2 661,021 + CCNA_00617 0.28 +0.8 661,021 - CCNA_00617 0.28 -1.3 661,022 + CCNA_00617 0.28 -1.5 661,030 - CCNA_00617 0.29 -1.8 661,030 - CCNA_00617 0.29 -1.5 661,043 + CCNA_00617 0.30 -0.0 661,077 - CCNA_00617 0.33 -4.8 661,086 + CCNA_00617 0.34 -0.3 661,094 - CCNA_00617 0.35 -1.8 661,103 + CCNA_00617 0.36 +0.3 661,123 + CCNA_00617 0.38 -0.5 661,144 - CCNA_00617 0.40 -0.2 661,176 + CCNA_00617 0.43 -2.2 661,212 - CCNA_00617 0.46 -0.5 661,225 - CCNA_00617 0.47 -1.2 661,245 + CCNA_00617 0.49 +0.3 661,248 - CCNA_00617 0.50 -0.8 661,252 + CCNA_00617 0.50 +0.3 661,252 + CCNA_00617 0.50 -1.2 661,252 + CCNA_00617 0.50 +0.2 661,252 + CCNA_00617 0.50 +1.2 661,252 - CCNA_00617 0.50 +1.0 661,260 - CCNA_00617 0.51 -2.0 661,260 - CCNA_00617 0.51 +2.5 661,260 - CCNA_00617 0.51 +1.5 661,260 - CCNA_00617 0.51 -1.0 661,270 - CCNA_00617 0.52 +1.5 661,288 + CCNA_00617 0.53 -1.0 661,288 + CCNA_00617 0.53 -0.2 661,288 + CCNA_00617 0.53 -0.2 661,293 + CCNA_00617 0.54 -0.1 661,296 - CCNA_00617 0.54 +1.3 661,296 - CCNA_00617 0.54 -1.3 661,382 - CCNA_00617 0.62 -1.2 661,402 - CCNA_00617 0.64 -0.0 661,441 + CCNA_00617 0.68 -0.1 661,449 - CCNA_00617 0.69 -0.0 661,453 + CCNA_00617 0.69 +0.8 661,483 + CCNA_00617 0.72 -0.0 661,514 + CCNA_00617 0.75 -0.6 661,541 - CCNA_00617 0.78 -1.5 661,592 + CCNA_00617 0.82 -0.4 661,592 + CCNA_00617 0.82 -0.6 661,600 - CCNA_00617 0.83 +1.5 661,600 - CCNA_00617 0.83 +0.5
Or see this region's nucleotide sequence