Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00506

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00504 and CCNA_00505 are separated by 204 nucleotidesCCNA_00505 and CCNA_00506 are separated by 5 nucleotidesCCNA_00506 and CCNA_00507 are separated by 5 nucleotidesCCNA_00507 and CCNA_00508 are separated by 67 nucleotides CCNA_00504: CCNA_00504 - 23S rRNA methyltransferase, at 519,729 to 520,193 _00504 CCNA_00505: CCNA_00505 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 520,398 to 520,949 _00505 CCNA_00506: CCNA_00506 - cytochrome b, at 520,955 to 522,235 _00506 CCNA_00507: CCNA_00507 - cytochrome c1, at 522,241 to 523,086 _00507 CCNA_00508: CCNA_00508 - aspartate protease, at 523,154 to 523,927 _00508 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 519.960 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.992 kb on - strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strandat 520.062 kb on + strand, within CCNA_00504at 520.062 kb on + strand, within CCNA_00504at 520.070 kb on - strand, within CCNA_00504at 520.090 kb on - strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.107 kb on + strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.163 kb on - strandat 520.171 kb on + strandat 520.253 kb on + strandat 520.253 kb on - strandat 520.307 kb on - strandat 520.333 kb on - strandat 520.334 kb on - strandat 520.355 kb on - strandat 520.355 kb on - strandat 520.394 kb on - strandat 520.449 kb on - strandat 520.509 kb on + strand, within CCNA_00505at 520.535 kb on + strand, within CCNA_00505at 520.543 kb on - strand, within CCNA_00505at 520.559 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.661 kb on + strand, within CCNA_00505at 520.746 kb on + strand, within CCNA_00505at 520.754 kb on - strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.779 kb on + strand, within CCNA_00505at 520.781 kb on + strand, within CCNA_00505at 520.787 kb on - strand, within CCNA_00505at 520.787 kb on - strand, within CCNA_00505at 520.944 kb on + strandat 520.949 kb on + strandat 520.978 kb on + strandat 521.063 kb on - strandat 521.118 kb on + strand, within CCNA_00506at 521.182 kb on + strand, within CCNA_00506at 521.299 kb on + strand, within CCNA_00506at 521.299 kb on + strand, within CCNA_00506at 521.311 kb on + strand, within CCNA_00506at 521.393 kb on + strand, within CCNA_00506at 521.398 kb on + strand, within CCNA_00506at 521.424 kb on + strand, within CCNA_00506at 521.429 kb on + strand, within CCNA_00506at 521.481 kb on + strand, within CCNA_00506at 521.509 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.654 kb on + strand, within CCNA_00506at 521.725 kb on - strand, within CCNA_00506at 521.799 kb on - strand, within CCNA_00506at 521.931 kb on + strand, within CCNA_00506at 522.063 kb on + strand, within CCNA_00506at 522.071 kb on - strand, within CCNA_00506at 522.073 kb on + strand, within CCNA_00506at 522.083 kb on + strand, within CCNA_00506at 522.083 kb on + strand, within CCNA_00506at 522.277 kb on + strandat 522.375 kb on + strand, within CCNA_00507at 522.375 kb on + strand, within CCNA_00507at 522.418 kb on + strand, within CCNA_00507at 522.519 kb on + strand, within CCNA_00507at 522.707 kb on + strand, within CCNA_00507at 522.717 kb on + strand, within CCNA_00507at 522.740 kb on + strand, within CCNA_00507at 522.770 kb on + strand, within CCNA_00507at 522.783 kb on - strand, within CCNA_00507at 522.933 kb on + strand, within CCNA_00507at 522.933 kb on + strand, within CCNA_00507at 522.977 kb on + strand, within CCNA_00507at 522.977 kb on + strand, within CCNA_00507at 522.985 kb on - strand, within CCNA_00507at 523.019 kb on + strandat 523.041 kb on + strandat 523.049 kb on - strandat 523.172 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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519,960 + CCNA_00504 0.50 -1.2
519,991 + CCNA_00504 0.56 -1.1
519,991 + CCNA_00504 0.56 -0.9
519,992 - CCNA_00504 0.57 +0.5
520,047 + CCNA_00504 0.68 -2.2
520,047 + CCNA_00504 0.68 -0.3
520,055 - CCNA_00504 0.70 +1.1
520,055 - +0.2
520,062 + CCNA_00504 0.72 -0.2
520,062 + CCNA_00504 0.72 -0.0
520,070 - CCNA_00504 0.73 +0.6
520,090 - CCNA_00504 0.78 -1.8
520,106 + CCNA_00504 0.81 +0.1
520,106 + CCNA_00504 0.81 -0.1
520,106 + CCNA_00504 0.81 -0.2
520,106 + CCNA_00504 0.81 +1.3
520,106 + CCNA_00504 0.81 -1.9
520,106 + CCNA_00504 0.81 +1.5
520,106 + CCNA_00504 0.81 -0.3
520,106 + CCNA_00504 0.81 -1.1
520,106 + CCNA_00504 0.81 -0.4
520,107 + CCNA_00504 0.81 -0.2
520,114 - CCNA_00504 0.83 +2.8
520,114 - CCNA_00504 0.83 +0.4
520,114 - CCNA_00504 0.83 +0.2
520,114 - CCNA_00504 0.83 -0.4
520,114 - CCNA_00504 0.83 -0.8
520,114 - CCNA_00504 0.83 -0.8
520,114 - CCNA_00504 0.83 -1.5
520,115 - CCNA_00504 0.83 +0.3
520,115 - CCNA_00504 0.83 +1.0
520,115 - CCNA_00504 0.83 -0.8
520,115 - CCNA_00504 0.83 +0.8
520,115 - CCNA_00504 0.83 -0.8
520,115 - CCNA_00504 0.83 -0.5
520,136 + CCNA_00504 0.88 -1.2
520,136 + CCNA_00504 0.88 +0.5
520,163 - -1.1
520,171 + +0.6
520,253 + -0.5
520,253 - -2.6
520,307 - -1.6
520,333 - -2.0
520,334 - +0.5
520,355 - -1.7
520,355 - -0.7
520,394 - -0.6
520,449 - +1.0
520,509 + CCNA_00505 0.20 -0.1
520,535 + CCNA_00505 0.25 -1.8
520,543 - CCNA_00505 0.26 -1.1
520,559 + CCNA_00505 0.29 -0.6
520,615 + CCNA_00505 0.39 -1.7
520,615 + CCNA_00505 0.39 -1.4
520,661 + CCNA_00505 0.48 -2.1
520,746 + CCNA_00505 0.63 -1.0
520,754 - CCNA_00505 0.64 -1.8
520,779 + CCNA_00505 0.69 -0.2
520,779 + CCNA_00505 0.69 -0.7
520,779 + CCNA_00505 0.69 -3.0
520,781 + CCNA_00505 0.69 -0.1
520,787 - CCNA_00505 0.70 -1.6
520,787 - CCNA_00505 0.70 +1.2
520,944 + -0.8
520,949 + -0.1
520,978 + -1.1
521,063 - -2.1
521,118 + CCNA_00506 0.13 -3.2
521,182 + CCNA_00506 0.18 -2.8
521,299 + CCNA_00506 0.27 +0.5
521,299 + CCNA_00506 0.27 -2.2
521,311 + CCNA_00506 0.28 -0.9
521,393 + CCNA_00506 0.34 -2.1
521,398 + CCNA_00506 0.35 -0.9
521,424 + CCNA_00506 0.37 -4.0
521,429 + CCNA_00506 0.37 +0.6
521,481 + CCNA_00506 0.41 -1.0
521,509 + CCNA_00506 0.43 -1.1
521,587 + CCNA_00506 0.49 -3.8
521,587 + CCNA_00506 0.49 -2.3
521,609 + CCNA_00506 0.51 -4.1
521,609 + CCNA_00506 0.51 -2.7
521,609 + CCNA_00506 0.51 +0.3
521,654 + CCNA_00506 0.55 -2.9
521,725 - CCNA_00506 0.60 +1.3
521,799 - CCNA_00506 0.66 +2.3
521,931 + CCNA_00506 0.76 -1.5
522,063 + CCNA_00506 0.86 -1.7
522,071 - CCNA_00506 0.87 +2.3
522,073 + CCNA_00506 0.87 -2.6
522,083 + CCNA_00506 0.88 -3.3
522,083 + CCNA_00506 0.88 -4.0
522,277 + -3.3
522,375 + CCNA_00507 0.16 +1.3
522,375 + CCNA_00507 0.16 -1.1
522,418 + CCNA_00507 0.21 -2.7
522,519 + CCNA_00507 0.33 -1.7
522,707 + CCNA_00507 0.55 -1.7
522,717 + CCNA_00507 0.56 -4.5
522,740 + CCNA_00507 0.59 -1.7
522,770 + CCNA_00507 0.63 -3.8
522,783 - CCNA_00507 0.64 +0.3
522,933 + CCNA_00507 0.82 +3.3
522,933 + CCNA_00507 0.82 -2.0
522,977 + CCNA_00507 0.87 -1.4
522,977 + CCNA_00507 0.87 -0.3
522,985 - CCNA_00507 0.88 +0.7
523,019 + -3.7
523,041 + -0.9
523,049 - +2.3
523,172 + +0.0

Or see this region's nucleotide sequence