Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00245

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00243 and CCNA_00244 are separated by 142 nucleotidesCCNA_00244 and CCNA_00245 are separated by 28 nucleotidesCCNA_00245 and CCNA_00246 are separated by 44 nucleotidesCCNA_00246 and CCNA_00247 are separated by 141 nucleotides CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907 _00245 CCNA_00246: CCNA_00246 - cyclohexanol dehydrogenase, at 257,952 to 258,737 _00246 CCNA_00247: CCNA_00247 - two-component receiver protein SpdR, at 258,879 to 259,436 _00247 Position (kb) 257 258Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 256.791 kb on - strandat 256.819 kb on + strandat 256.860 kb on + strandat 256.892 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.999 kb on - strandat 256.999 kb on - strandat 256.999 kb on - strandat 257.024 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.054 kb on - strand, within CCNA_00244at 257.074 kb on + strand, within CCNA_00244at 257.077 kb on - strand, within CCNA_00244at 257.088 kb on + strand, within CCNA_00244at 257.120 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.181 kb on - strand, within CCNA_00244at 257.191 kb on - strand, within CCNA_00244at 257.210 kb on - strand, within CCNA_00244at 257.251 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.328 kb on + strand, within CCNA_00244at 257.334 kb on - strand, within CCNA_00244at 257.364 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.378 kb on + strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.394 kb on - strand, within CCNA_00244at 257.424 kb on + strand, within CCNA_00244at 257.444 kb on + strand, within CCNA_00244at 257.452 kb on - strand, within CCNA_00244at 257.495 kb on + strand, within CCNA_00244at 257.535 kb on + strandat 257.545 kb on + strandat 257.588 kb on + strandat 257.597 kb on + strandat 257.597 kb on + strandat 257.598 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.670 kb on + strand, within CCNA_00245at 257.670 kb on + strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.678 kb on - strand, within CCNA_00245at 257.691 kb on + strand, within CCNA_00245at 257.706 kb on + strand, within CCNA_00245at 257.714 kb on - strand, within CCNA_00245at 257.740 kb on + strand, within CCNA_00245at 257.787 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.832 kb on + strand, within CCNA_00245at 257.855 kb on + strand, within CCNA_00245at 257.863 kb on + strand, within CCNA_00245at 257.886 kb on + strandat 257.895 kb on - strandat 257.953 kb on - strandat 257.960 kb on + strandat 257.960 kb on + strandat 257.962 kb on + strandat 258.014 kb on - strandat 258.038 kb on - strand, within CCNA_00246at 258.049 kb on - strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.103 kb on - strand, within CCNA_00246at 258.110 kb on + strand, within CCNA_00246at 258.138 kb on + strand, within CCNA_00246at 258.146 kb on - strand, within CCNA_00246at 258.146 kb on - strand, within CCNA_00246at 258.151 kb on + strand, within CCNA_00246at 258.153 kb on - strand, within CCNA_00246at 258.228 kb on - strand, within CCNA_00246at 258.277 kb on + strand, within CCNA_00246at 258.296 kb on + strand, within CCNA_00246at 258.305 kb on + strand, within CCNA_00246at 258.341 kb on + strand, within CCNA_00246at 258.343 kb on + strand, within CCNA_00246at 258.348 kb on + strand, within CCNA_00246at 258.430 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.494 kb on + strand, within CCNA_00246at 258.520 kb on + strand, within CCNA_00246at 258.544 kb on + strand, within CCNA_00246at 258.552 kb on - strand, within CCNA_00246at 258.557 kb on - strand, within CCNA_00246at 258.581 kb on + strand, within CCNA_00246at 258.585 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.592 kb on + strand, within CCNA_00246at 258.686 kb on + strandat 258.694 kb on - strandat 258.704 kb on + strandat 258.705 kb on - strandat 258.711 kb on + strandat 258.741 kb on + strandat 258.741 kb on + strandat 258.741 kb on + strandat 258.785 kb on - strandat 258.786 kb on + strandat 258.786 kb on + strandat 258.833 kb on + strandat 258.833 kb on + strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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256,791 - -0.5
256,819 + -0.8
256,860 + -1.7
256,892 - +0.0
256,991 + -0.6
256,991 + -1.9
256,999 - -0.5
256,999 - +0.9
256,999 - -1.1
257,024 + CCNA_00244 0.11 +0.7
257,046 + CCNA_00244 0.14 -1.9
257,046 + CCNA_00244 0.14 -3.1
257,054 - CCNA_00244 0.16 +2.0
257,074 + CCNA_00244 0.19 -1.4
257,077 - CCNA_00244 0.19 -0.3
257,088 + CCNA_00244 0.21 -0.1
257,120 + CCNA_00244 0.26 -0.4
257,147 + CCNA_00244 0.30 -1.0
257,147 + CCNA_00244 0.30 -1.6
257,147 + CCNA_00244 0.30 +0.0
257,147 + CCNA_00244 0.30 +2.0
257,155 - CCNA_00244 0.31 -1.0
257,155 - CCNA_00244 0.31 +0.0
257,155 - CCNA_00244 0.31 -0.9
257,155 - CCNA_00244 0.31 -3.1
257,173 + CCNA_00244 0.34 -2.3
257,181 - CCNA_00244 0.36 -0.6
257,191 - CCNA_00244 0.37 -0.3
257,210 - CCNA_00244 0.40 +0.4
257,251 - CCNA_00244 0.46 +1.3
257,259 + CCNA_00244 0.48 -2.8
257,264 + CCNA_00244 0.48 +0.9
257,264 + CCNA_00244 0.48 +1.4
257,264 + CCNA_00244 0.48 +0.7
257,272 - CCNA_00244 0.50 +0.2
257,272 - CCNA_00244 0.50 +0.4
257,272 - CCNA_00244 0.50 +1.0
257,272 - CCNA_00244 0.50 -1.8
257,272 - CCNA_00244 0.50 -1.0
257,272 - CCNA_00244 0.50 -1.4
257,272 - CCNA_00244 0.50 -2.7
257,272 - CCNA_00244 0.50 -2.6
257,307 + CCNA_00244 0.55 -1.8
257,316 - CCNA_00244 0.57 -0.8
257,316 - CCNA_00244 0.57 +1.7
257,328 + CCNA_00244 0.58 -0.5
257,334 - CCNA_00244 0.59 -0.3
257,364 + CCNA_00244 0.64 +0.0
257,366 + CCNA_00244 0.64 -0.5
257,366 + CCNA_00244 0.64 -0.8
257,374 - CCNA_00244 0.66 +1.0
257,378 + CCNA_00244 0.66 -2.1
257,386 + CCNA_00244 0.67 -0.3
257,394 - CCNA_00244 0.69 -0.6
257,424 + CCNA_00244 0.73 -0.4
257,444 + CCNA_00244 0.76 -0.2
257,452 - CCNA_00244 0.78 -0.7
257,495 + CCNA_00244 0.84 -4.2
257,535 + -1.7
257,545 + +0.0
257,588 + -1.3
257,597 + -0.9
257,597 + -0.5
257,598 + -0.8
257,617 + -0.1
257,617 + +0.4
257,617 + +0.5
257,625 - +0.4
257,625 - +0.2
257,625 - +0.3
257,670 + CCNA_00245 0.16 -0.8
257,670 + CCNA_00245 0.16 -3.8
257,672 - CCNA_00245 0.17 +2.0
257,672 - CCNA_00245 0.17 +2.0
257,678 - CCNA_00245 0.19 -0.3
257,691 + CCNA_00245 0.24 -3.8
257,706 + CCNA_00245 0.29 -1.5
257,714 - CCNA_00245 0.32 -2.6
257,740 + CCNA_00245 0.41 -0.4
257,787 + CCNA_00245 0.58 -3.0
257,809 + CCNA_00245 0.65 +0.9
257,809 + CCNA_00245 0.65 +0.3
257,809 + CCNA_00245 0.65 -0.8
257,809 - CCNA_00245 0.65 -1.0
257,809 - CCNA_00245 0.65 -3.6
257,817 - CCNA_00245 0.68 +0.0
257,817 - CCNA_00245 0.68 -2.3
257,817 - CCNA_00245 0.68 -3.7
257,832 + CCNA_00245 0.73 -2.9
257,855 + CCNA_00245 0.81 -2.2
257,863 + CCNA_00245 0.84 -2.1
257,886 + -0.7
257,895 - -1.0
257,953 - +0.0
257,960 + +0.7
257,960 + +0.8
257,962 + -1.0
258,014 - +0.3
258,038 - CCNA_00246 0.11 +0.4
258,049 - CCNA_00246 0.12 -0.7
258,073 + CCNA_00246 0.15 +0.4
258,073 + CCNA_00246 0.15 +0.1
258,103 - CCNA_00246 0.19 -0.2
258,110 + CCNA_00246 0.20 -0.6
258,138 + CCNA_00246 0.24 +2.8
258,146 - CCNA_00246 0.25 -2.9
258,146 - CCNA_00246 0.25 -1.2
258,151 + CCNA_00246 0.25 -1.8
258,153 - CCNA_00246 0.26 -0.8
258,228 - CCNA_00246 0.35 +0.9
258,277 + CCNA_00246 0.41 -0.1
258,296 + CCNA_00246 0.44 -2.8
258,305 + CCNA_00246 0.45 -1.6
258,341 + CCNA_00246 0.49 -1.6
258,343 + CCNA_00246 0.50 -3.4
258,348 + CCNA_00246 0.50 -1.2
258,430 + CCNA_00246 0.61 -3.6
258,477 + CCNA_00246 0.67 +0.4
258,477 + CCNA_00246 0.67 +1.0
258,477 + CCNA_00246 0.67 -2.3
258,477 + CCNA_00246 0.67 -0.9
258,477 + CCNA_00246 0.67 +0.6
258,482 + CCNA_00246 0.67 -1.5
258,485 - CCNA_00246 0.68 -0.9
258,490 - CCNA_00246 0.68 -2.5
258,490 - CCNA_00246 0.68 -0.6
258,494 + CCNA_00246 0.69 +0.5
258,520 + CCNA_00246 0.72 -0.4
258,544 + CCNA_00246 0.75 +0.3
258,552 - CCNA_00246 0.76 -0.9
258,557 - CCNA_00246 0.77 +1.0
258,581 + CCNA_00246 0.80 +1.0
258,585 - CCNA_00246 0.81 -0.6
258,590 - CCNA_00246 0.81 +0.4
258,590 - CCNA_00246 0.81 -2.9
258,592 + CCNA_00246 0.81 -2.3
258,686 + +0.3
258,694 - +1.5
258,704 + -0.1
258,705 - -0.5
258,711 + +0.9
258,741 + +0.3
258,741 + +0.1
258,741 + +0.7
258,785 - +1.5
258,786 + -2.4
258,786 + -0.4
258,833 + -0.3
258,833 + -1.1
258,841 - +1.7
258,841 - -2.4
258,841 - +0.8
258,882 - +1.8

Or see this region's nucleotide sequence